We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7so9 | - | https://dergipark.org.tr/en/pub/biotechstudies/issue/77337/1332403 | Omicron variants bind to human angiotensin-converting enzyme 2 (ACE2) much stronger due to higher number of charged-charged interactions | 2023 | S Kalyoncu- Biotech Studies - dergipark.org.tr | Three dimensional RBD domain structures of many variants used in this study were already in RCSB PBD database ( PDB IDs: 7EKF for Alpha, 7EKG for Beta, 7EKC for Delta, 7SO9 for |
| 2 | 6n38 | - | https://www.sciencedirect.com/science/article/pii/S0022283622005447 | Coevolution-Guided Mapping of the Type VI Secretion Membrane Complex-Baseplate Interface | 2023 | E Vanliolu, YG Santin, I Filella-Merce- Journal of Molecular, 2023 - Elsevier | the EAEC T6SS wedge complex structure 10 as a benchmark in a The known structure of the wedge complex ( PDB : 6N38 ) was AlphaFold2 structural models were generated using the |
| 3 | 5u26 | - | https://www.sciencedirect.com/science/article/pii/S0223523423003756 | Comprehensive coverage on anti-mycobacterial endeavour reported during 2022 | 2023 | TM Dhameliya, DD Vekariya, HY Patel- European Journal of, 2023 - Elsevier | reported in 2022 with their mechanism of action, structure activity relationships, along with the key Further, molecular docking revealed compound 76 inhibiting DHFR ( PDB : 5U26 ) and |
| 4 | 7lxw | 7lxx, 7ly0, 7soa, 7sof, 7ly3 | https://www.cell.com/cell-reports/pdf/S2211-1247(22)01868-X.pdf | Structural analysis of receptor engagement and antigenic drift within the BA. 2 spike protein | 2023 | JW Saville, D Mannar, X Zhu, AM Berezuk, S Cholak- Cell Reports, 2023 - cell.com | Cryo-EM structures of the BA.2 S-human ACE2 complex and of the extensively mutated BA.2 Our analysis reveals structural mechanisms underlying the antigenic drift in the rapidly |
| 5 | 6tz8 | - | https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1011056 | Natural product ligands of FKBP12: Immunosuppressive antifungal agents FK506, rapamycin, and beyond | 2023 | A Rivera, J Heitman- PLoS pathogens, 2023 - journals.plos.org | adapted from Harnessing calcineurin-FK506-FKBP12 crystal structures from invasive fungal pathogens to develop antifungal agents ( PDB 6TZ8 ) [3]. The original figure was published |
| 6 | 7jx3 | - | https://www.nature.com/articles/s42003-023-04782-6 | Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants | 2023 | K Shitaoka, A Higashiura, Y Kawano- Communications, 2023 - nature.com | package with the combination of RBD structure ( PDB ID:7EAM) and Fab structures ( PDB ID:7CHB and 7CHP) as search models. The structure refinement was performed using the ... Class 3b/S309 (PDB ID:7JX3), Class 4a/CR3022 (PDB ID:6ZLR), Class 4b/S2X259 (PDB ID:7M7W), and Class 5/S2H97 (PDB ID:7M7W) open data were used in Fig. 3a. |
| 7 | 3tcq | - | https://www.mdpi.com/1422-0067/24/7/6298 | Cheminformatics-Based Study Identifies Potential Ebola VP40 Inhibitors | 2023 | E Broni, C Ashley, J Adams, H Manu, E Aikins- International Journal of, 2023 - mdpi.com | Modeller generated five models using the 3D structures of 3TCQ and 7K5L as templates. structure of the VP40 with PDB ID 1ES6 as the parent template for modelling. 1ES6s structure |
| 8 | 6b8s | - | https://www.sciencedirect.com/science/article/pii/S0005272822004182 | Unveiling the membrane bound dihydroorotate: Quinone oxidoreductase from Staphylococcus aureus | 2023 | FM Sousa, P Pires, A Barreto, PN Refojo- et Biophysica Acta (BBA, 2023 - Elsevier | Because of the low solubility of this molecule, we used a structural menaquinone analogue lacking the aliphatic carbon tail, dimethyl-naphthoquinone (DMN). The enzyme showed a ... |
| 9 | 5t8t | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4651464 | Characterization of a Plant S-Adenosylmethionine Synthetase from Acacia Koa | 2023 | D Borthakur, JT Carrillo- Available at SSRN 4651464 - papers.ssrn.com | structural 8 changes due to mutagenesis (Fig. 8). Species name and PDB numbers of the 9 structures Neisseria gonorrhoeae ( 5T8T ), Lactiplantibacillus plantarum (7R3B). From eukarya |
| 10 | 6n1f | - | https://journals.asm.org/doi/abs/10.1128/mbio.00408-23 | Exaptation of Inactivated Host Enzymes for Structural Roles in Orthopoxviruses and Novel Folds of Virus Proteins Revealed by Protein Structure Modeling | 2023 | P Mutz, W Resch, G Faure, TG Senkevich, EV Koonin- Mbio, 2023 - Am Soc Microbiol | Given that all of the models in this work were compared both to the PDB and to the large database of AlphaFold2 ... OPG20 (C10L), OPG31 (C4L), and OPG165 (A37R) are homologs of hydroxylases.... the 2OG-Fe(II) Oxygenase family of Burkholderia pseudomallei (6n1f |