We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3EIY | 2008 | 8 |
| 3EG4 | 2008 | 10 |
| 3ECD | 2008 | 9 |
| 3E7D | 2008 | 2 |
| 3E5Y | 2008 | 2 |
| 3E5B | 2008 | 10 |
| 3DMS | 2008 | 5 |
| 3DMO | 2008 | 14 |
| 3DAH | 2008 | 13 |
| 3D6B | 2008 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3dms | - | http://pubs.acs.org/doi/abs/10.1021/bi300483w | Induced Fit and the Catalytic Mechanism of Isocitrate Dehydrogenase | 2012 | S Gon?alves, SP Miller, MA Carrondo, AM Dean? - Biochemistry, 2012 - ACS Publications | ... To date, there are 27 crystal structures of E. coli isocitrate dehydrogenase in the Protein Data Bank (Table 3). Burkholderia pseudomallei Strain 1710b (UNIPROT Q3JV82), 74.2% identity 3dms 71 1.65 2011 0.92 0.62 ... |
| 2 | 3dms | - | https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-S17-S2 | Functional relevance of dynamic properties of Dimeric NADP-dependent Isocitrate Dehydrogenases | 2012 | R Vinekar, C Verma, I Ghosh - BMC , 2012 - bmcbioinformatics.biomedcentral. | ... The current study therefore concentrates mainly on dimeric NADP-dependent IDHs from subfamilies I and II and additionally subfamily IV (Table 1), with an emphasis on regulation in dimeric M.tb IDH. Burcholderi apseudomallei BpIDH Q63WJ4_BURPS 3DMS. ... |
| 3 | 3dmp | - | http://www.sciencedirect.com/science/article/pii/S0141813016304482 | Unravelling the Potential of a New Uracil Phosphoribosyltransferase (UPRT) from Arabidopsis thaliana in Sensitizing HeLa Cells towards 5-Fluorouracil | 2016 | S Narayanan, P Sanpui, L Sahoo, SS Ghosh - International journal of , 2016 - Elsevier | ... UPRT templates from Protein Data Bank (PDB) PDB: 2EHJ (E. coli UPRT), PDB: 3DMP(Burkholderia pseudomallei UPRT) and PDB: 1BD4 (Toxoplasma gondii UPRT) were chosenfor generating the three ... 1). The three-dimensional structure of AtUPRT ( Fig. ... |
| 4 | 3dmp | - | https://arxiv.org/abs/2111.07786 | Independent SE (3)-Equivariant Models for End-to-End Rigid Protein Docking | 2021 | OE Ganea, X Huang, C Bunne, Y Bian- arXiv preprint arXiv, 2021 - arxiv.org | the 3D structure of a protein-protein complex from the individual unbound structures , of the initial locations and orientations of the two structures . Our model, named EQUIDOCK, |
| 5 | 3dmp | 3qbp, 3e5b, 3hm0 | https://www.sciencedirect.com/science/article/pii/S1570963920301515 | Tetramer protein complex interface residue pairs prediction with LSTM combined with graph representations | 2020 | D Sun, X Gong- Biochimica et Biophysica Acta (BBA)-Proteins and, 2020 - Elsevier | The structure diagram of LSTM neural network is shown in Fig. 3. (See Fig. 1, Fig Table 1. Dataset. DataSet, PDB ID 2H8N, 2JBR, 2NQO, 2Y32, 3DFQ, 3ESI, 3G7K, 3HM0, 3OHP, 3RD4, 3 V15, 1IZ1, 1JL2. 1KAM, 1NSW, 2GJD, 2R90, 2ZYZ, 3CDK, 3CO2, 3DMP , 3F6Z, 1BV4, 1YIF |
| 6 | 3dmp | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/cctc.201701223 | Enzymatic Production of NonNatural Nucleoside5Monophosphates by a Thermostable Uracil Phosphoribosyltransferase | 2018 | J del Arco, J Acosta, HM Pereira, A Perona- , 2018 - Wiley Online Library | Overall structure and architecture of active site. We have determined the crystal structure of TtUPRT ( PDB 1v9s) at 2.1 resolution (Table 1). The 1o5), UPRT from Escherichia coli (EcUPRT; PDB 2ehj), UPRT from Burkholderia pseudomallei (BpUPRT; PDB 3dmp ), UPRT from |
| 7 | 3dmo | - | http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-11-04078 | Achievements of structural genomics | 2011 | TC Terwilliger - 2011 - permalink.lanl.gov | ... Semi-automated Structure determination ~ ... PDB 3BV6, 2275 AA Metallo protein - ... l University ofIowa 2 University of Michigan Medical School Crystal structures of the FDTS-FAD- 3The JointCenter for Structural Genomics at GNF 4SSRL, Stanford University dUMP complex. ... |
| 8 | 3dmo | 3mc4, 3laa, 3gir, 3qk8, 3l3b, 3kre, 3oc7, 3ixc, 3kzx, 3eiz, 3o0h, 3mqw, 3md7, 3pzy, 3o0k, 3fq3, 3mxu, 3mdx, 3js5, 3gp3, 3qhx, 3o0m, 3js4, 3o38, 3mqd, 3qlj, 3qd5, 3nrr, 3ndo, 3qbp, 3ol3, 3r6f, 3p32, 3lv0, 3njd, 3mpz, 3lqw, 3gwa, 3quv, 3dms, 3kzu, 3p2y, 3nfw, 3lnc, 3eg4, 3gbz, 3k31, 3fs2, 3qh4, 3oc9, 3ipw, 3pgx, 3oa3, 3h81, 3h7f, 3enk, 3ld3, 3k9w, 3oj7, 3lr4, 3oj6, 3gwc, 3i3f, 3ek2, 3oks, 3ngj, 3pk0, 3n5o, 3moy, 3qxz, 3cxk, 3ngf, 3ndn, 3e7d, 3ii9, 3meb, 3oec, 3nwo, 3qat, 3pe8, 3k2c, 3fvb, 3lb5, 3r1i, 3p0t, 3krs, 3hgb, 3f0d, 3ecd, 3mx6, 3gvg, 3p4t, 3myb, 3kxq, 3krb | http://search.proquest.com/openview/6d1f24bc5507d574e710805358571132/1?pq-origsi... | Rare Sidechain Conformations in Proteins and DNA | 2015 | BJ Hintze - 2015 - search.proquest.com | ... Ponder and Richards in 1987 (Ponder and Richards, 1987), and they are important. tools in structural biology (Dunbrack, 2002). ... the Protein Data Bank ( PDB ) (Berman, 2000). ... 2010; Winn et al., 2011), protein structure prediction and design (Bower et al., 1997; ... |
| 9 | 3dmo | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2863/full | Crystal structures of MBP fusion proteins | 2015 | DS Waugh - Protein Science, 2015 - Wiley Online Library | ... 65 Nineteen of the MBP fusion protein structures deposited in the PDB include surface ... Table 2. Surface Entropy Reduction Mutations in MBP and Their Participation in Crystal Contacts 3DMO D83A/K84A ... |
| 10 | 3dmo | 3mpz | http://meriva.pucrs.br/dspace/handle/10923/5732 | Análise bioquímica, estrutural e funcional da enzima citidina deaminase (EC 3.5. 4.5) de Mycobacterium tuberculosis H37Rv | 2014 | ZAS Quitian - 2014 - meriva.pucrs.br | ... This work presents the crystal structures of MtCDA in complex with uridine (2.4 Å resolution) and ...process, showing that structural flexibility of some residues are important to product binding. ... MtCDAstructure. The role of the conserved glutamate-47 (E47) residue was ... |