We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4kam | - | https://mostwiedzy.pl/pl/publication/enzymes-of-the-l-methionine-biosynthesis-pa... | Enzymes of the L-methionine biosynthesis pathway in Candida albicans as potential novel targets for antifungal chemotherapy | 2024 | A Kupliska - 2024 - mostwiedzy.pl | Analysis of the crystal structure of the bacterial Met15p from Wolinella succinogenes, revealed Reports concerning the oligomeric structure of the Str2p enzyme provide evidence for a |
| 2 | 4g5d | - | https://www.degruyter.com/document/doi/10.1515/chem-2024-0005/html | Anti-parasitic activity and computational studies on a novel labdane diterpene from the roots of Vachellia nilotica | 2024 | NF Al-Tannak, JV Anyam, EY Santali, AI Gray- Open, 2024 - degruyter.com | structure with proteins was retrieved from a protein data bank ( PDB ) with codes: 2P7U and 4G5D agents and a structural basis for drug design) ( structures of prostaglandin F synthase |
| 3 | 6bfu | - | https://www.nature.com/articles/s41467-024-49693-0 | Neutralizing antibodies reveal cryptic vulnerabilities and interdomain crosstalk in the porcine deltacoronavirus spike protein | 2024 | W Du, O Debski-Antoniak, D Drabek- Nature, 2024 - nature.com | the antigenic structure of the PDCoV S protein. Through functional and structural characterization The PDB file of PDCoV spike protein ( PDB ID: 6BFU ) and SARS-CoV-2 spike protein ( |
| 4 | 8dya | - | https://www.nature.com/articles/s41467-024-49656-5 | A broadly generalizable stabilization strategy for sarbecovirus fusion machinery vaccines | 2024 | J Lee, C Stewart, A Schfer, EM Leaf, YJ Park- Nature, 2024 - nature.com | (Right) SARS-CoV-2 S ( PDB 6VXX) colored by sequence conservation across multiple the C-44 cryoEM structure previously determined with splayed open apex 17 ( PDB 8DYA ). c Size- |
| 5 | 4jwp | - | https://www.nature.com/articles/s41467-024-49952-0 | Acetyl-CoA synthetase activity is enzymatically regulated by lysine acetylation using acetyl-CoA or acetyl-phosphate as donor molecule | 2024 | C Qin, LG Graf, K Striska, M Janetzky, N Geist- Nature, 2024 - nature.com | structure of Ribosomal-protein-alanine N-acetyltransferase from Brucella melitensis solved in complex with Acetyl-CoA ( PDB : 4JWP The resulting structural ensembles reveal that acetyl- |
| 6 | 5k85 | 5u29 | https://aaltodoc.aalto.fi/items/ef5fbad3-e949-4f46-8925-8ec058ca3b0b | Investigating the substrate promiscuity of acetyl-CoA synthetase from A. ethanivorans through a structural approach | 2025 | M Nikkanen - 2025 - aaltodoc.aalto.fi | Analogous and similarly spatially aligned residues residues seem to have the same function in Acs structures with PDB accession numbers 5u29 and 5k85 (figure 3) [27]. |
| 7 | 6tys | 6u1t | https://www.sciencedirect.com/science/article/pii/S1476927125000143 | Molecular modelling and optimization of a high-affinity nanobody targeting the nipah virus fusion protein through in silico site-directed mutagenesis | 2025 | NMO Odchimar, ANG Dulay, FL Orosco- Computational Biology and, 2025 - Elsevier | Nipah virus (NiV) is a re-emerging zoonotic pathogen with a high mortality rate and no effective treatments, prompting the search for new antiviral strategies. While conventional antiviral ... Protein datasets of experimentally described monoclonal antibody (mAb; PDB ID: 7K14) and fragment antigen-binding antibodies (FAbs; PDB ID: 6T3F, 6U1T, 6TYS, 7UOP, 7UPA, 7UPB, 7UPD, 7UPK, and 7UP9) in complex with NiV pre-fusion protein (NiVF) and NiV pre-fusion apoprotein (PDB ID: 5EVM) were retrieved from the Prot |
| 8 | 3fdz | 3gp5 | https://core.ac.uk/download/pdf/649473507.pdf | Revisiting the Plasmodium falciparum druggable genome using predicted structures | 2025 | K Godinez-Macias, D Chen, J Wallis- npj Drug Discovery, 2 (1), 2025 - core.ac.uk | To assess druggability evidence, we leveraged the AlphaFill database of predicted ligandtransplants based on homology of AlphaFold structures to all structures in the PDB REDO |
| 9 | 7jw0 | 7k45, 7lxy, 7so9, 7sob | https://academic.oup.com/ve/article-abstract/11/1/veaf027/8159764 | Comprehensive analysis of SARS-CoV-2 Spike evolution: epitope classification and immune escape prediction | 2025 | NFB Teruel, M Crown, R Rajsbaum, M Bashton- Virus, 2025 - academic.oup.com | to epitope 3 from structures 7A5R, 6W41, 7LM8, 7S5Q, 7JW0 , 7X1M, and 7R6X. Comparing all the vectors of interaction for S309, we see that one Kappa structure ( PDB 7SOB), from |
| 10 | 6uww | - | https://onlinelibrary.wiley.com/doi/abs/10.1155/bmri/4196295 | In Silico Investigation of Phytochemicals From Clinically Tested Herbal Extracts as Potential Dihydrofolate Reductase Inhibitors for Buruli Ulcer | 2025 | AAK Mohamed, T Woasiedem- BioMed Research, 2025 - Wiley Online Library | original Schrdinger-prepared structure . This PDB structure , while Schrdinger retains the original biological residue numbering from the full-length protein sequence ( PDB ID: 6UWW ). |