SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 3fvb - http://dx.plos.org/10.1371/journal.pone.0068421 Factors Controlling the Redox Potential of ZnCe6 in an Engineered Bacterioferritin Photochemical 'Reaction Centre' 2013 A Mahboob, S Vassiliev, PK Poddutoori, A van der Est? - PloS one, 2013 - dx.plos.org ... In addition, this aminoacid is conserved among ferritins from several organisms (PDB ID: 2FKZ, 3E1M, 3IS8, 3FVB) suggesting that it serves to regulate heme potential. Replacing it with an aliphatic residue is expected to eliminate this negative effect. ...
2 3fvb - http://dr.library.brocku.ca/handle/10464/5755 Towards reverse engineering of Photosystem II: Synergistic Computational and Experimental Approaches 2014 A Mahboob - 2014 - dr.library.brocku.ca ... 62 3.4.3. Comparison of water channels found in this work to channelsobtained from static structures ..... ... 19 Figure 1.2 Structure of PSII dimershowing subunits CP47,D1,D2,cyt b559,CP43,cyt c550 ...
3 4f82 4f4a http://search.proquest.com/openview/afda5488243a36c7973c912298122359/1?pq-origsi... Investigating Imatinib-Resistant Mutations in Abl Kinase 2020 A Lyczek - 2020 - search.proquest.com 10 *(52& Illustration of important structural features of imatini<
4 4ni5 - http://pubs.rsc.org/is/content/articlehtml/2016/cc/c6cc00051g Structure-guided stereoselectivity inversion of a short-chain dehydrogenase/reductase towards halogenated acetophenones 2016 A Li, L Ye, X Yang, C Yang, J Gu, H Yu - Chemical Communications, 2016 - pubs.rsc.org ... As a powerful method to decipher a possible molecular basis for enzyme properties, structuralcomparison involving the detailed structure alignment has ... using SDRs from Drosophilamelanogaster (31% identity, PDB: 1SNY A) and Brucella suis (48% identity, PDB: 4NI5 A) as ...
5 5unb - https://www.biorxiv.org/content/early/2018/12/01/480194.abstract Universal architectural concepts underlying protein folding patterns 2018 A Lesk, R Subramanian, L Allison, D Abramson- bioRxiv, 2018 - biorxiv.org to give proteins their intricate three-dimensional shapes and folding patterns (tertiary structure ) Unravelling protein architecture and discovering the relationship among these three major levels of of protein folding patterns have revealed recurrent themes at all structural levels (2
6 3ftp - http://onlinelibrary.wiley.com/doi/10.1002/bit.24956/abstract Crystallographic analysis and structure-guided engineering of NADPH-dependent Ralstonia sp. alcohol dehydrogenase toward NADH cosubstrate specificity 2013 A Lerchner, A Jarasch, W Meining? - Biotechnology and Bioengineering, 2013 - Wiley Online Library ... The coding sequence for RasADH (starting with Tyr2 according to the UniProt data bank accession number C0IR58) was amplified from the plasmid pEam-RasADH (Lavandera et al. ... 8 homologous ?-ketoacyl-acyl carrier protein reductase of Streptomyces coelicolor (PDB code: ...
7 4kam - https://www.nature.com/articles/s41598-024-79886-y Targeting Candida albicans O-acetyl-L-homoserine sulfhydrylase (Met15p) in antifungal treatment 2024 A Kupliska, K Rzd, J Stefaniak-Skorupa- Scientific Reports, 2024 - nature.com Several O-acetyl-L-homoserine or L-homocysteine structural analogs were analyzed as potential inhibitors of CaMet15p. In these studies, a newly developed RP-HPLC-MS method ... The quaternary structure of CaMet15p is therefore consistent with those of its S. cerevisiae29 (PDB code: 8OVH), Wolinella succinogenes13 (PDB code: 3RI6), and Mycobacterium marinum30 (PDB code: 4KAM) counterparts.
8 4kam - https://mostwiedzy.pl/pl/publication/enzymes-of-the-l-methionine-biosynthesis-pa... Enzymes of the L-methionine biosynthesis pathway in Candida albicans as potential novel targets for antifungal chemotherapy 2024 A Kupliska - 2024 - mostwiedzy.pl Analysis of the crystal structure of the bacterial Met15p from Wolinella succinogenes, revealed Reports concerning the oligomeric structure of the Str2p enzyme provide evidence for a
9 4ege - http://scripts.iucr.org/cgi-bin/paper?no5060 Crystallization and preliminary X-ray diffraction analysis of Xaa-Pro dipeptidase from Xanthomonas campestris 2014 A Kumar, VN Are, B Ghosh, U Agrawal - Section F: Structural , 2014 - scripts.iucr.org ... Although the structures of XPD43 orthologues from the eubacteria Mycobacterium ulcerans, Bacillus anthracis and Thermotoga maritima (PDB entries 4ege , 3q6d and 2zsg ) have been deposited in the PDB by structural genomics consortia, none of these enzymes have been ...
10 3tcq - https://www.biorxiv.org/content/10.1101/2020.05.27.108969v1.abstract Common substructures and sequence characteristics of sandwich-like proteins from 42 different folds 2020 A Kister- BioRxiv, 2020 - biorxiv.org structural classification in PDBSum database30 does not support sandwich-like architecture was examined. For secondary structure analysis, the information about localization of strands in sequences was taken from PDB .31 For supersecondary structure (SSS) of the domains