We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6NB7 | 2019 | 34 |
| 6Q04 | 2020 | 33 |
| 7K45 | 2020 | 32 |
| 7JZL | 2020 | 28 |
| 7N8H | 2021 | 28 |
| 7JVC | 2021 | 27 |
| 3LAA | 2010 | 26 |
| 7LXY | 2021 | 26 |
| 7JVA | 2021 | 25 |
| 6TYS | 2020 | 25 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4iuj | - | https://www.nature.com/articles/s41589-024-01813-z | PROTAR Vaccine 2.0 generates influenza vaccines by degrading multiple viral proteins | 2025 | C Zhang, J Hou, Z Li, Q Shen, H Bai, L Chen- Nature Chemical, 2025 - nature.com | Data Bank ( PDB ) under accession numbers 4WSB, 4WSB, 4IUJ , 2IQH, 7JM3 and 4OPH, respectively. The 3D structure of influenza B viral PA protein was deposited to the PDB under |
| 2 | 6cja | - | https://www.nature.com/articles/s41589-025-01954-9 | Terminal alkyne formation by a pyridoxal phosphate-dependent enzyme | 2025 | JB Hedges, JA Marchand, C Calv-Tusell- Nature Chemical, 2025 - nature.com | PDB 6CJA , we then superposed the structure of the second adjacent monomer from the PDB 6CJA catalytic dimer onto the structure residues present in the structure of the N terminus of |
| 3 | 6d9y | - | https://academic.oup.com/bbb/advance-article-abstract/doi/10.1093/bbb/zbaf015/79... | Crystal structure of l-2-keto-3-deoxyrhamnonate 4-dehydrogenase involved in the non-phosphorylating pathway of l-rhamnose metabolism by bacteria | 2025 | M Akagashi, S Watanabe- Bioscience, Biotechnology, and, 2025 - academic.oup.com | The closest related structure in the Protein Data Bank ( PDB ) is the hypothetical protein of Burkholderia phymatum ( PDB ID 6D9Y ); rmsd of 0.5 A over 237 C atoms with a sequence |
| 4 | 6mtz | - | https://www.nature.com/articles/s41586-024-08417-6 | Structures and mechanism of condensation in non-ribosomal peptide synthesis | 2025 | A Pistofidis, P Ma, Z Li, K Munro, KN Houk- Nature, 2025 - nature.com | the two parts with protein ligation 15, and solved the structures of the substrate-and product-bound states. The structures show the precise orientation of the megaenzyme preparing ... Initial phases were calculated by molecular replacement in Phaser v.2.9.0 using the full chain A (with domains F1A1T1C2A2T2) of Protein Data Bank (PDB) 6MTZ (ref. 14), followed by iterative refinement in the programs Phenix |
| 5 | 6d9y | - | https://www.nature.com/articles/s41598-024-65627-8 | Crystal structure of l-2-keto-3-deoxyfuconate 4-dehydrogenase reveals a unique binding mode as a -furanosyl hemiketal of substrates | 2024 | M Akagashi, S Watanabe, S Kwiatkowski, J Drozak- Scientific Reports, 2024 - nature.com | Although the crystal structure of l-KDRDH was unavailable, the closest related structure in the PDB , the hypothetical SDR protein from Burkholderia phymatum ( 6D9Y ; not yet published) |
| 6 | 6c9e | - | https://www.nature.com/articles/s42003-024-07299-8 | The structural and functional analysis of mycobacteria cysteine desulfurase-loaded encapsulin | 2024 | Y Tang, Y Liu, M Zhang, W Lan, M Ma, C Chen- Communications, 2024 - nature.com | ( PDB 6C9E ) as the initial model. Model building and refinement was performed within Coot 0.8.9.2 and Phenix 1.14, respectively. The final refined models were validated by MolProbity |
| 7 | 6tys | - | https://www.nature.com/articles/s41467-024-48601-w | A potent Henipavirus cross-neutralizing antibody reveals a dynamic fusion-triggering pattern of the G-tetramer | 2024 | P Fan, M Sun, X Zhang, H Zhang, Y Liu, Y Yao- Nature, 2024 - nature.com | Top (a) and side (b) views of the crystal structure of the NiV BD G HD /1E5 Fab complex. G HD /EB2 ( PDB ID: 2VSM) and G HD /m102.3 ( PDB ID: 6CMI) structures ... Prediction of G-F interactions based on Discovery Studio The GHD (PDB ID: 2VSM) and sF (PDB ID: 6TYS) proteins were docked using the Dock Proteins protocol (ZDOCK) in Discovery Studio 4.5. |
| 8 | 4kam | - | https://mostwiedzy.pl/pl/publication/enzymes-of-the-l-methionine-biosynthesis-pa... | Enzymes of the L-methionine biosynthesis pathway in Candida albicans as potential novel targets for antifungal chemotherapy | 2024 | A Kupliska - 2024 - mostwiedzy.pl | Analysis of the crystal structure of the bacterial Met15p from Wolinella succinogenes, revealed Reports concerning the oligomeric structure of the Str2p enzyme provide evidence for a |
| 9 | 4g5d | 4h7p, 4h51 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4758152 | Targeting Leishmania with Nitrovinyl Derivatives: Synthesis, in Vitro Assessment, and Computational Exploration | 2024 | A Asadipour, F Ghelich Khani, F Sharifi- Vitro Assessment, and - papers.ssrn.com | nitrovinyl pharmacophore within the structures of -nitrostyrenes PDB files were employed throughout all procedures, each Ligand interactions of compound 17 with 4G5D (left) and 19 ... several notable high-probability outcomes are evident, with the scores associated with the 1XTP (a SAM-dependent methyltransferase) and 4G5D (Prostaglandin F synthase) receptors exhibiting the highest degree of prominence |
| 10 | 3laa | - | https://arxiv.org/abs/2411.03112 | Multiscale differential geometry learning for protein flexibility analysis | 2024 | H Feng, JY Zhao, GW Wei- arXiv preprint arXiv:2411.03112, 2024 - arxiv.org | Each PDB structure includes a set of global features, such as PDB files. Local features for each protein include packing density, amino acid type, occupancy, and secondary structure |