We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9ZH8 | 2025 | 0 |
| 9ZAX | 2025 | 0 |
| 9ZAV | 2025 | 0 |
| 9ZAO | 2025 | 0 |
| 9ZAG | 2025 | 0 |
| 9Z9C | 2025 | 0 |
| 9Z8K | 2025 | 0 |
| 9Z6R | 2025 | 0 |
| 9Z4D | 2025 | 0 |
| 9Z2Z | 2025 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7m53 | 7skz | https://onlinelibrary.wiley.com/doi/abs/10.1111/imr.70000 | A Structural Voyage Toward the Landscape of Humoral and Cellular Immune Escapes of SARSCoV2 | 2025 | J Liu, Y Wu, GF Gao- Immunological Reviews, 2025 - Wiley Online Library | Herein, from the perspectives of structural immunology, we outline the characteristics and : 7M53 ), and S2P6 (blue, PDB : 7RNJ) are superimposed with the prefusion S trimer ( PDB : |
| 2 | 7m53 | - | https://www.nature.com/articles/s42003-022-03262-7 | Structural definition of a pan-sarbecovirus neutralizing epitope on the spike S2 subunit | 2022 | NK Hurlburt, LJ Homad, I Sinha, MF Jennewein- Communications, 2022 - nature.com | a Structural alignment of stem helix peptides to CV3-25 Fab and B6 Fab (PDBid: 7M53 ) shown The CV3-25/peptide structure has been deposited in the PDB (7RAQ). The negative stain |
| 3 | 7ly3 | 7ral | https://www.cell.com/cell-reports/pdf/S2211-1247(22)00798-7.pdf | Cryo-EM structures of SARS-CoV-2 Omicron BA. 2 spike | 2022 | V Stalls, J Lindenberger, SMC Gobeil, R Henderson- Cell Reports, 2022 - cell.com | The structures used in this analysis included PDB IDs 7KE8 (G6141), 7KE6 (G6142), 7KE7 (G6143), 7KE4 (G6144), 7LWS (Alpha), 7LYL (Beta), 8CSA (TM), 7LWL (Mk1), 7LWI (Mk2), |
| 4 | 7ly3 | - | https://www.nature.com/articles/s41577-022-00784-3 | Broadly neutralizing antibodies to SARS-CoV-2 and other human coronaviruses...a | S1 N-terminal domain (NTD) nAbs, supersite (S2M28, Protein Data Bank (PDB) ID 7LY3). | 2022 | Y Chen, X Zhao, H Zhou, H Zhu, S Jiang- Nature reviews, 2022 - nature.com | The cryogenic electron microscopy structure revealed that S2E12 binds the receptor-binding ridge, contacting 18 residues in the RBD. The S protein F486 residue fills in a buried cavity |
| 5 | 7ly0 | - | https://www.nature.com/articles/s41564-022-01092-1 | Differential neutralizing antibody responses elicited by CoronaVac and BNT162b2 against SARS-CoV-2 Lambda in Chile | 2022 | ML Acevedo, A Gaete-Argel, L Alonso-Palomares- Nature, 2022 - nature.com | determined crystal structures ( PDB : 7BNN, PDB : 7BWJ, PDB : 7LY0 ). Structural alignments c) Same as a) for antibody S2M28 solved by CryoEM (PDBid: 7LY0 ), which recognizes the |
| 6 | 7lxz | 7ly2 | https://www.cell.com/cell-reports/pdf/S2211-1247(21)01401-7.pdf | Neutralizing antibody 5-7 defines a distinct site of vulnerability in SARS-CoV-2 spike N-terminal domain | 2021 | G Cerutti, Y Guo, P Wang, MS Nair, M Wang, Y Huang- Cell reports, 2021 - cell.com | We produced a structural superposition of all NTD-directed antibodies deposited in the PDB , superposed on NTD Ca atoms, in the context of SARS-CoV-2 spike trimer (Figure 2A). ... Figure S1. Sequence alignment for 5-7 with their corresponding germline genes, Related to Figures 1 and 2. 7LXZ McCallum et al., 2021 |
| 7 | 7lxz | 7ly3 | https://www.cell.com/trends/biochemical-sciences/fulltext/S0968-0004(23)00078-6 | Standardizing macromolecular structure files: further efforts are needed | 2023 | N D'Arminio, D Giordano, B Scafuri, A Facchiano- Trends in Biochemical, 2023 - cell.com | We present a brief overview of some of the issues we had to face in this specific case; these issues can probably be generalized to many other structures collected in the PDB database. |
| 8 | 7lxy | - | https://www.nature.com/articles/s41467-022-32262-8 | SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization | 2022 | D Mannar, JW Saville, Z Sun, X Zhu, MM Marti- Nature, 2022 - nature.com | structure , ACE2 affinity, and evasion of antibodies afforded by previously emerged variant spikes, providing a general structural coordinates ( PDB code 7MJG, 7MJM, 7MJN, 7LXY , 7K43 |
| 9 | 7lxy | 7ly2, 7lxz | https://chemrxiv.org/engage/chemrxiv/article-details/612839bab817b405680b98f1 | Predicting spike protein NTD mutations of SARS-CoV-2 causing immune escape by molecular dynamics simulations | 2021 | L Zhou, L Wu, C Peng, Y Yang, Y Shi, Z Xu, W Zhu - 2021 - chemrxiv.org | 7L2F 7C 2L 7LQ W 7CW S 7L2C 7L2D 7L2E 7LAB 7LXY 7LY2 7LXZ 4A8 ( PDB ID: 7C2L), FC05 ( PDB ID: 7CWS), 2-51 ( PDB ID: 7L2C), 1-87 ( PDB ID 6. Walls, AC; Park, YJ; Tortorici, MA; Wall, A.; McGuire, AT; Veesler, D., Structure , Function, and Antigenicity of the Sars-Cov-2 |
| 10 | 7lxy | 7ly2, 7lxz, 7ly3 | https://www.nature.com/articles/s41423-021-00752-2 | Neutralizing antibodies for the prevention and treatment of COVID-19 | 2021 | L Du, Y Yang, X Zhang- Cellular & Molecular Immunology, 2021 - nature.com | Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) initiates the infection process by binding to the viral cellular receptor angiotensin-converting enzyme 2 through the receptor-binding domain (RBD) in the S1 subunit of the viral spike (S) protein. ... a–e Cryo-EM structures of the SARS-CoV-2 S trimer bound to NTD-targeting nAbs a S2L28 (PDB 7LXZ), b S2M28 (PDB 7LY2), c S2X333 (PDB 7LXY), d 4-8 (PDB 7LQV), and e 4A8 (PDB 7C2L). |