We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4F2N | 2012 | 20 |
| 3UAM | 2011 | 20 |
| 3V7O | 2012 | 20 |
| 3SDO | 2011 | 19 |
| 4IX8 | 2014 | 19 |
| 3IML | 2009 | 18 |
| 3IJP | 2009 | 17 |
| 3EOO | 2008 | 17 |
| 3TCQ | 2012 | 16 |
| 4GIE | 2012 | 16 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3gp5 | - | http://www.sciencedirect.com/science/article/pii/S0020169314001042 | Vanadate in structural biology | 2014 | S Akabayov, B Akabayov - Inorganica Chimica Acta, 2014 - Elsevier | ... Protein data bank; Data mining; Protein-vanadate complex. ... Structures of biological macromolecules containing ligands with vanadium were downloaded from the Protein Databank (www.pdb.org ... PDB, ProteinOrganism, CLASS a, Geometry b, DNA/RNA c, Metal Ion d, TS e, Ligand ... |
| 2 | 4xfd | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2018.1552199 | Validation of NAD synthase inhibitors for inhibiting the cell viability of Leishmania donovani: In silico and in vitro approach | 2019 | H Mandal, S Vijayakumar, S Yadav- Structure and, 2019 - Taylor & Francis | Skip to Main Content |
| 3 | 6uww | 6aqg | http://www.journals.chemsociety.org.ng/index.php/jcsn/article/view/1103 | VIRTUAL SCREENING AND MACHINE LEARNING-BASED IDENTIFICATION OF TROPICAL PLANT METABOLITES WITH MULTIPLE Mycobacterium ulcerans | 2025 | CE Duru, CN Nwofor- Journal of Chemical, 2025 - journals.chemsociety.org.ng | structure (obtained from the Protein Data Bank, PDB ) superimposed onto the X-ray-resolved crystal structure of the For 6UWW and 6AQG, structural optimization efforts should |
| 4 | 3eiy | - | https://academic.oup.com/bib/article-abstract/22/6/bbab159/6278145 | Utilizing graph machine learning within drug discovery and development | 2021 | T Gaudelet, B Day, AR Jamasb, J Soman- Briefings in, 2021 - academic.oup.com | structural relationships between their amino acid residues [19, 20] and small molecule drugs as graphs relating their constituent atoms and chemical bonding structure [ data structures . Figure 7. Illustration of (A) a protein (PDB accession: 3EIY) and (B) its graph representation derived based on intramolecular distance with cut-off threshold set at 10Å. |
| 5 | 2klx | - | https://pubs.acs.org/doi/abs/10.1021/acs.jctc.9b00101 | Utility of Covalent Labeling Mass Spectrometry Data in Protein Structure Prediction with Rosetta | 2019 | ML Aprahamian, S Lindert- Journal of Chemical Theory and, 2019 - ACS Publications | like the following: Which amino acid types provide the most useful structural information structures that served as a nonredundant representation of single chain monomers in the PDB the protein set, distributions of the total number of residues, secondary structure content... The six proteins selected from the ab initio set were PDB ID 1tpm, 2klx, 2nc2, 2y4q, 3iql, and... |
| 6 | 3eiy | - | https://arxiv.org/abs/2012.05716 | Utilising Graph Machine Learning within Drug Discovery and Development | 2020 | T Gaudelet, B Day, AR Jamasb, J Soman- arXiv preprint arXiv, 2020 - arxiv.org | and evolve along a temporal dimension resulting in changes to composition, structure and attributes One such approach is to use a graph's structural information to regularise embeddings authors suggest the atten- tion mechanism is decoupled from the architecture and should |
| 7 | 2lwk | - | https://deepblue.lib.umich.edu/handle/2027.42/155127 | Using Machine Learning to Better Predict the Structure of RNA and RNA Containing Complexes | 2020 | S Chhabra - 2020 - deepblue.lib.umich.edu | 53 3.5 Top 10 RNA Structures for 2LWK predicted from sequence using CS-Fold and Rosetta structures . The statistics from Protein Data Bank ( PDB ) (http://www.rcsb.org) current understanding of the RNA structure -function relationships is limited due to |
| 8 | 3d6b | 3ii9 | http://pubs.acs.org/doi/abs/10.1021/ja908555n | User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments | 2009 | L Li, W Du, R Ismagilov - Journal of the American Chemical Society, 2009 - ACS Publications | ... These crystals yielded a structure of 2.2 ? resolution and space group P2 1 2 1 2 1 (PDBid3D6B). Without ... manuscript. We thank Bart Staker for checking the structure of glutaryl-CoA dehydrogenase for PDB deposition. Supporting Information ... |
| 9 | 6nb8 | - | https://www.preprints.org/manuscript/202005.0270 | Use of Isoelectric Point for Fast Identification of Anti-SARS CoV-2 Coronavirus Proteins | 2020 | K Mallik - 2020 - preprints.org | If we follow the radial structure of the SARS CoV-2 virion, a gradual fall the in the pI values is 6NB8 (+) Human S230 antigen-binding fragment light chain 6.046 to make anti-viral drugs for SARS CoV-2. From the pI consideration, application of human Interferon- ( PDB ID 1AU1 |
| 10 | 6d6j | 3oj7 | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.9b00407 | Upgrading and Validation of the AMBER Force Field for Histidine and Cysteine Zinc (II)-Binding Residues in Sites with Four Protein Ligands | 2019 | M Macchiagodena, M Pagliai, C Andreini- Journal of chemical, 2019 - ACS Publications | quantum mechanical calculations on a training set of high-quality protein structures , encompassing the in the catalytic reaction of enzymes, by stabilizing the tertiary/quaternary structure of a cells.(5,7) The high thermodynamic stability of the tetrahedral zinc(II) structural sites in |