We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5vog | 4mh4 | https://www.tdx.cat/handle/10803/663022 | Phase Combination and its Application to the Solution of Macromolecular Structures: Developing ALIXE and SHREDDER | 2018 | CL Milln Nebot - 2018 - tdx.cat | Table 1 Test set for performance evaluation of SHREDDER and ALIXE... ID PDB 5VOG solvent content |
| 2 | 2ko7 | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Structure-based Computational analysis of Protein Binding sites for Function and Druggability in Macrophage Infectivity Potentiator (MIP) Protein of Legionella pneumophila | 2013 | CK Naidu, Y Suneetha - Current Trends in Biotechnology & Pharmacy, 2013 - search.ebscohost.com | ... with rapamycin protein (mip) (PDB ID: 2VCD) (Ceymann et al., 2008) was retrieved from the proteindata bank (PDB). ... PDB ID Protein Name ... 2KO7 Chain A Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with Cycloheximide- N ... |
| 3 | 3qxz | 3i3f, 3s6o | https://scholarworks.iupui.edu/handle/1805/17959 | Analysis of Pseudo-Symmetry in Protein Homo-Oligomers | 2018 | CJR Rajendran - 2018 - scholarworks.iupui.edu | Figure 3.2: PDB File format In a PDB file, as mentioned in the above figure 3.2, the Atom type is used to capture the structures are calculated to get the overall structural index Structure Index for Trimers can be calculated by measuring the distance between the original |
| 4 | 4ijn | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0184183 | Sugar analog synthesis by in vitro biocatalytic cascade: A comparison of alternative enzyme complements for dihydroxyacetone phosphate production as a | 2017 | CJ Hartley, NG French, JA Scoble, CC Williams- PloS one, 2017 - journals.plos.org | of pH 7.09.0 and between 2537C. Most of the selected enzymes had known crystal structures (those with ATP-recycling enzymes, two acetate kinases (AceK) from Mycobacterium smegmatis and Methanosarcina thermophila (AceK Ms ; WI_011727188; PDB 4IJN and AceK |
| 5 | 6q06 | - | https://www.biorxiv.org/content/10.1101/2021.04.14.439284v1.abstract | Cryptic SARS-CoV2-spike-with-sugar interactions revealed by'universal'saturation transfer analysis | 2021 | CJ Buchanan, B Gaunt, PJ Harrison, A Le Bas, A Khan- bioRxiv, 2021 - biorxiv.org | computational modelling environments provide exact structural models. In this way, uSTA analysis provides an automated pipeline from raw NMR free induction decay (FID) signals all the way to proteinligand structures in a freely available form for the non-expert |
| 6 | 5i1f | - | https://www.jbc.org/article/S0021-9258(21)00156-3/abstract | Bacillus subtilis YngB contributes to wall teichoic acid glucosylation and glycolipid formation during anaerobic growth | 2021 | CH Wu, J Rismondo, RML Morgan, Y Shen- Journal of Biological, 2021 - ASBMB | Section of Structural and Synthetic Biology, Department of Infectious Disease, Imperial College London, London, United Kingdom The crystal structure of YngB revealed that the protein has the typical fold and all necessary active site features of a functional UGPase |
| 7 | 3meq | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2011.07914.x/full | Furfural reduction mechanism of a zinc-dependent alcohol dehydrogenase from Cupriavidus necator JMP134 | 2012 | CH Kang, R Hayes, EJ Sanchez, BN Webb? - Molecular Microbiology, 2012 - Wiley Online Library | ... through the coordinates of ADH from Brucella melitensis (3MEQ). Iterative model building and refinement took place using the programs coot (Emsley et al., 2010) and phenix (Adams et al., 2010). All FurX coordinates have been deposited in the Protein Data Bank: 3S1L (apo ... |
| 8 | 2kwl | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2011.07845.x/full | The coenzyme A disulphide reductase of Borrelia burgdorferi is important for rapid growth throughout the enzootic cycle and essential for infection of the mammalian host | 2011 | CH Eggers, MJ Caimano, RA Malizia? - Molecular Microbiology, 2011 - Wiley Online Library | ... The orientation is the same as Fig. 3 published in (Wallen et al., 2008). PDB code for the BaCoADR structure used is 3CGD. B. The predicted active site of BbCoADR. BbCoADR residues [Cys 42 (chain A) and Tyr366' and Tyr424' (chain B)] are indicated. ... |
| 9 | 3ifg | - | http://dx.plos.org/10.1371/journal.pone.0009280 | The X-ray crystal structure of Escherichia coli succinic semialdehyde dehydrogenase; structural insights into NADP+/enzyme interactions | 2010 | CG Langendorf, TLG Key, G Fenalti, WT Kan? - PloS one, 2010 - dx.plos.org | ... Shortly after the human SSADH structure was published, the structure of SSADH from Burkholderia pseudomallei, without a substrate or cofactor (PDB ID: 3ifg and 3ifh), was deposited into the PDB by the Seattle Structural Genomic Centre for Infectious Disease. ... |
| 10 | 6uww | 6aqg | http://www.journals.chemsociety.org.ng/index.php/jcsn/article/view/1103 | VIRTUAL SCREENING AND MACHINE LEARNING-BASED IDENTIFICATION OF TROPICAL PLANT METABOLITES WITH MULTIPLE Mycobacterium ulcerans | 2025 | CE Duru, CN Nwofor- Journal of Chemical, 2025 - journals.chemsociety.org.ng | structure (obtained from the Protein Data Bank, PDB ) superimposed onto the X-ray-resolved crystal structure of the For 6UWW and 6AQG, structural optimization efforts should |