We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6AP5 | 2017 | 0 |
| 6ANZ | 2017 | 0 |
| 8SQP | 2023 | 0 |
| 8SQO | 2023 | 0 |
| 8SOY | 2023 | 0 |
| 8SNJ | 2023 | 0 |
| 8SNG | 2023 | 0 |
| 8SLH | 2023 | 0 |
| 5VPS | 2017 | 0 |
| 5VO7 | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3r1i | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3867646/ | Insilico Characterization and Homology Modeling of Arabitol Dehydrogenase (ArDH) from Candida albican | 2013 | MW Sarwar, IB Saleem, A Ali, F Abbas - Bioinformation, 2013 - ncbi.nlm.nih.gov | … used for multiple sequence alignment of ArDH with other dehydrogenases from Mycobacterium marinum (PDB Id: 3R1I), Candida parapsilosis ... |
| 2 | 3r1j | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3765361/ | Protein Similarity Networks Reveal Relationships among Sequence, Structure, and Function within the Cupin Superfamily | 2013 | R Uberto, EW Moomaw - PLoS One, 2013 - journals.plos.org | File S1 Combined Supporting Information Files - Alpha-ketoglutarate-dependent taurine dioxygenase Mycobacterium avium 3r1j |
| 3 | 3r20 | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3732440/ | Insight from the structural molecular model of cytidylate kinase from Mycobacterium tuberculosis | 2013 | NK Verma, B Singh - Bioinformation, 2013 - ncbi.nlm.nih.gov | ... known structure (template) of Mycobacterium smegmatis (PDB ID: 3R20) was chosen from proteindatabank (PDB) by using ... experimental structure of cytidylate kinase of Mycobacterium tuberculosis is not yet available in PDB (Protein Data Bank), comparative modeling ... |
| 4 | 4o3v | 4lso, 4mei, 4jf8, 4kz1, 4nhf | http://www.nature.com/srep/2015/150603/srep10912/full/srep10912.html | Molecular and structural analysis of Legionella DotI gives insights into an inner membrane complex essential for type IV secretion | 2015 | T Kuroda, T Kubori, XT Bui, A Hyakutake, Y Uchida… - Scientific reports, 2015 - nature.com | ... (PDB ids 4JF8, 4KZ1, 4LSO, 4MEI, and 4NHF) and Richettsia typhi (4O3V) were published in PDB database. The arrangement of the VirB8 secondary structure isessentially the same as that of DotI C except for α3 and α5 (Fig. ... |
| 5 | 4qhq | - | http://www.nature.com/nmeth/journal/v12/n1/full/nmeth.3213.html | The I-TASSER Suite: protein structure and function prediction | 2015 | J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang - Nature methods, 2015 - nature.com | ... binding protein from Burkholderia cenocepacia bound to methionine (CAMEO: C0081; PDB:4qhqA) (e ... bound to calcium ion and thymidine-3′,5′-diphosphate (CAMEO: C0046; PDB:4qf4A ... on the significance of threading alignments and the density of structure clustering; the ... |
| 6 | 3fdz | - | http://www.nature.com/ncomms/journal/v4/n4/abs/ncomms2759.html | Tyr26 phosphorylation of PGAM1 provides a metabolic advantage to tumours by stabilizing the active conformation | 2013 | T Hitosugi, L Zhou, J Fan, S Elf, L Zhang, J Xie? - Nature Communications, 2013 - nature.com | ... (a) Cartoon representation of 2,3-BPG location from structure 3FDZ superposed on PGAM1 (PDB accession code: 1YFK). H11 and Y92 are directly proximal to and Y26 is also close to cofactor (2,3-BPG)/substrate (3-PG) binding site. ... |
| 7 | 4kyx | - | http://www.nature.com/ncomms/2015/150804/ncomms8871/full/ncomms8871.html | Crystal structure, biochemical and cellular activities demonstrate separate functions of MTH1 and MTH2 | 2015 | M Carter, AS Jemth, A Hagenkort, BDG Page… - Nature …, 2015 - nature.com | ... The structure was solved by molecular replacement of the template structure file with PDB ID 4KYX using MolRep, and Arp/wARP was used for building the initial model, followed by iterative building cycles using the Refine program in Phenix ... |
| 8 | 4ylg | - | http://www.nature.com/nature/journal/vaop/ncurrent/full/nature16940.html | Cryo-EM structure of the yeast U4/U6. U5 tri-snRNP at 3.7 resolution | 2016 | THD Nguyen, WP Galej, X Bai, C Oubridge - Nature, 2016 - nature.com | ... 4: Secondary structure of the snRNAs in tri-snRNP. ... S. pombe ILS spliceosomal complex 19, 20(red, PDB 3JB9), was overlaid on GDPs found in other guanine-nucleotide binding proteins(grey, PDB coordinates: 1DAR, 2E1R, 2WRI, 1Z0I, 5CA8, 1XTQ, 4YLG, 1SF8, 5BXQ ... |
| 9 | 4iuj | - | http://www.nature.com/nature/journal/v527/n7576/abs/nature15525.html | Crystal structure of the RNA-dependent RNA polymerase from influenza C virus | 2015 | N Hengrung, K El Omari, IS Martin, FT Vreede - Nature, 2015 - nature.com | ... he published fragments of FluPolA (PDB accessions 4IUJ, 4AWH, 4CB4, 3A1G and 2VY7) were fitted by eye using Coot, which was used for all model building. ... |
| 10 | 4qq7 | - | http://www.nature.com/articles/srep19498 | Structural understanding of the recycling of oxidized ascorbate by dehydroascorbate reductase (OsDHAR) from Oryza sativa L. japonica | 2016 | H Do, IS Kim, BW Jeon, CW Lee, AK Park, AR Wi - Scientific Reports, 2016 - nature.com | ... C with an RMSD of 2.07 ) and the putative stringent starvation protein A from Burkholderiacenocepacia (PDB code 4QQ7) (122 aligned C ... The dimer structure of CLIC1 has a largehydrophobic surface, which can be used for membrane incorporation and chloride ion ... |