We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YGK | 2025 | 0 |
| 9YH9 | 2025 | 0 |
| 9YIS | 2025 | 0 |
| 7KQZ | 2020 | 0 |
| 7KI9 | 2021 | 0 |
| 9YIT | 2025 | 0 |
| 7KI8 | 2021 | 0 |
| 7K72 | 2020 | 0 |
| 7K69 | 2021 | 0 |
| 7K68 | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3dah | - | http://escholarship.org/uc/item/29g595sg.pdf | Modeling of Protein Flexibility and Inter-Molecular Interactions: Applications to Computer-Aided Drug Design and Discovery | 2012 | R Ai - 2012 - escholarship.org | ... Page 22. xxi Figure 5.1 .95 Summary of ligand binding capacity and subdomains of HSA using PDB structure 1E7E. Long-chain fatty acids are depicted in VDW representation using VMD 1.8.7. ... |
| 2 | 3o0h | - | http://eprints.sunway.edu.my/893/ | Sulphur (lone pair) interactions with FAD in flavoenzymes | 2018 | RFN Silva, ACS Sacco, I Caracelli- Zeitschrift fur, 2018 - eprints.sunway.edu.my | Finally, in the 22 SOX enzymes found in PDB , there were 45 monomers having FAD S(lp)(FAD) interactions in three examples of GR enzymes: (a) 1K4Q [64], (b) 3O0H [64] and with FAD via S(lp)(FAD) interactions that pro- vide stability to the secondary structure and |
| 3 | 3la9 | 3laa, 4lgo, 3s6l | http://elifesciences.org/content/5/e11861v1 | alpha/beta coiled coils | 2016 | MD Hartmann, CT Mendler, J Bassler, I Karamichali - eLife, 2016 - elifesciences.org | ... 286 Given the structural identity between the -layers resulting from hexads and nonads in 287coiled coils, and the supersecondary structures we characterized at the transition between 288 ...systematically for other instances of -layers in proteins of known structure. ... |
| 4 | 3upt | - | http://elib.uni-stuttgart.de/handle/11682/1465 | Systematic analysis of the sequence-structure-function relationships of thiamine diphosphate-dependent enzymes | 2015 | C Vogel - 2015 - elib.uni-stuttgart.de | ... A putative acetohydroxyacid synthase (AHAS) from the yeast Torulaspora delbrueckii (TdAHAS, sid|11616) and a transketolase from Agrobacterium tumefaciens (AtTK, sid|29832), both missing experimentally determined structure information, were modeled using the structures of ScAHAS (pdb|1N0H, Pang et al. 2004) and the transketolase from Burkholderia pseudomallei (BpTK, pdb|3UPT, Baugh et al. 2013) as templates, respectively.e ... |
| 5 | 6dj8 | - | http://ej.kubagro.ru/2020/07/pdf/11.pdf | COMPARISON OF STRUCTURAL PROTEIN OF SILKWORM DENSOVIRUS BMDNV-1 WITH PROTEINS OF VIRUSES OF BACTERIA AND ARCHAEA TO STUDY THE POSSIBILITY OF FALSE POSITIVE ANSWERS IN THE ELISA - TESTING OF CATERPILLARS | 2020 | Antonovich ZA, Nazipova NN, ..., Scientific Journal of KubSAU , 2020 - ej.kubagro.ru | PDB . . , SMTL ID : 6dj8 .1 ( Structure of DNA polymerase III subunit beta from Borrelia burgdorferi) |
| 6 | 3rmi | 4q04, 4gt1, 4kzp | http://edepot.wur.nl/466662 | Prediction of Homodimeric Residue-residue Contacts Through Co-evolutionary and Sequence-based Analysis | 2018 | Y Hsieh - 2018 - edepot.wur.nl | 1000 residue range, and a quick pass of the identifiers through RCSB PDB's web-based However, we do not perform any sort of structural alignment to filter out structurally similar the case that this choice biases our dataset towards a certain type of structure , therefore impacting |
| 7 | 4i1v | - | http://dx.plos.org/10.1371/journal.pone.0129600 | Tethering of Epidermal Growth Factor (EGF) to Beta Tricalcium Phosphate (βTCP) via Fusion to a High Affinity, Multimeric βTCP-Binding Peptide: Effects on … | 2015 | LM Alvarez, JJ Rivera, L Stockdale, S Saini, RT Lee… - PloS one, 2015 - dx.plos.org | ... The TT motif has been implicated in the interactions of dephospho-CoA kinases with the diphosphate group of adenosine di-phosphate (ADP) through hydrogen bonding mechanisms (PDB ID#s: 1JJV, 4I1V; [83]), suggesting a potential role for the TT motif in our binding peptide for interaction with calcium phosphate ... |
| 8 | 3ujh | - | http://dx.plos.org/10.1371/journal.pone.0125831 | Evidence for Positive Selection within the PgiC1 Locus in the Grass Festuca ovina | 2015 | Y Li, B Canbäck, T Johansson, A Tunlid, HC Prentice - 2015 - dx.plos.org | ... 0.45 Å root-mean-square deviations for the backbone atoms from the template Toxoplasma 3ujh.pdb structure. ... of the candidate sites in the homology-modeled PGIC1 3-D structure, it can ...For comparative purposes, the 3-D protein structural locations of the PGI amino acid sites ... |
| 9 | 3ezl | - | http://dx.plos.org/10.1371/journal.pone.0119771 | Structure, Dynamics, and Interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 Examined by Molecular Modeling, Simulation, and Electrostatic … | 2015 | I Bhutani, S Loharch, P Gupta, R Madathil, R Parkesh - PloS one, 2015 - dx.plos.org | ... and Lys-418 based on the active site residues of the templates (PDB ID: 4F4Q ... Another interestingobservation was high structural similarity of generated three-dimensional structure of DprE2 withSDR family members such as acetoacetyl-coA reductase (PDBID: 3EZL, rmsd: 3.43 ... |
| 10 | 3p96 | - | http://dx.plos.org/10.1371/journal.pone.0115409.g001 | Characterization of M. tuberculosis SerB2, an Essential HAD-Family Phosphatase, Reveals Novel Properties | 2014 | GP Yadav, S Shree, R Maurya, N Rai, DK Singh… - PloS one, 2014 - dx.plos.org | ... BLAST [22] search against the NCBI database with MtSerB2 revealed highest similarity (83%)with M. avium SerB whose X-ray structure has recently been reported [17]. Homology modelsof MtSerB2 based on M. avium SerB (PDB code 3P96) were generated using ... |