We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4N67 | 2014 | 2 |
| 4N5F | 2013 | 4 |
| 4N0W | 2013 | 2 |
| 4N0Q | 2013 | 1 |
| 4MSO | 2013 | 1 |
| 4MPQ | 2013 | 3 |
| 4MOW | 2013 | 6 |
| 4MI2 | 2013 | 0 |
| 4MH4 | 2013 | 4 |
| 4MG4 | 2013 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p96 | - | http://link.springer.com/article/10.1007/s00018-016-2177-2 | The M. tuberculosis HAD phosphatase (Rv3042c) interacts with host proteins and is inhibited by Clofazimine | 2016 | S Shree, AK Singh, R Saxena, H Kumar - Cellular and Molecular , 2016 - Springer | ... SanyalAffiliated withBiochemistry Division, CSIR-Central Drug Research Institute; and 1 more: ,Ravishankar RamachandranAffiliated withMolecular and Structural Biology Division ... Homologymodels of MtSerB2 based on M. avium SerB (PDB code 3P96) were generated ... |
| 2 | 3p96 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24238/full | Identification of a novel ligand binding site in phosphoserine phosphatase from the hyperthermophilic archaeon Thermococcus onnurineus | 2013 | TY Jung, YS Kim, BH Oh, E Woo - Proteins: Structure, Function, and Bioinformatics, 2013 - Wiley Online Library | ... Flexible movement between the open structure (PDB ID: 1L8L, 1RKV, 2FEA, and 3M1Y), colored in bright orange, and closed structures (PDB ID: 1F5S, 1L7M, 1J97, 1L7P, 3P96, and 3KD3), colored in bluewhite, were analyzed by the program DynDom. ... |
| 3 | 3p96 | 3km3, 3k9g | http://www.nature.com/articles/nmeth.3212 | Macromolecular X-ray structure determination using weak, single-wavelength anomalous data | 2014 | G Bunkóczi, AJ McCoy, N Echols… - Nature …, 2014 - nature.com | ... phasing, accounting for 73% of such structures deposited in the Protein Data Bank (PDB;http://www.pdb.org/) 1 in 2013. In the SAD method, the X-ray diffraction from anomalouslyscattering atoms in a molecule provides X-ray phase information for the entire crystal structure ... |
| 4 | 3p4t | - | http://search.proquest.com/openview/daf8fc817648cf5585c39f0c60983d2f/1?pq-origsi... | Mycobacterium tuberculosis cholesterol catabolism utilizes a structurally and evolutionarily discrete class of acyl-Coenzyme A dehydrogenase | 2015 | MF Wipperman - 2015 - search.proquest.com | This image (grey) shows the crystal structure of tetrameric FadE13 from M smegmatis (pdb: 3P4T) using the DAMAVER modeling algorithm. |
| 5 | 3p4i | 4dq8 | http://uir.unisa.ac.za/handle/10500/19148 | Mycobacterium tuberculosis kinases as potential drug targets: production of recombinant kinases in E. coli for functional characterization and enzyme inhibition | 2015 | V Lukman - 2015 - uir.unisa.ac.za | ... Other mycobacterial AKs have been deposited in the Protein Data Bank (www.pdb.org), with high levels of similarity to the putative Mtb AK (M. avum, pdb 3P4I at 74.4% and M. marinum pdb 4DQ8 at 75.1%). ... |
| 6 | 3p4i | - | http://www.biomedcentral.com/1472-6807/12/24/ | Structural and mechanistic investigations on Salmonella typhimurium acetate kinase (AckA): identification of a putative ligand binding pocket at the dimeric interface | 2012 | S Chittori, H Savithri, M Murthy - BMC structural biology, 2012 - biomedcentral.com | ... Crystal structures of two archeal acetate kinases, from Thermotoga maritima (PDB:2IIR, unpublished results) and Methanosarcina thermophila[15] and one from Mycobacterium avium (PDB:3P4I, unpublished results) have been determined earlier. ... |
| 7 | 3p3a | 4lw8, 3hzu | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25874 | Challenges and opportunities of automated proteinprotein docking: HDOCK server versus human predictions in CAPRI Rounds 3846 | 2020 | Y Yan, J He, Y Feng, P Lin, H Tao- Proteins: Structure, 2020 - Wiley Online Library | prediction of this dimer interface is expected. For T144, the TPC1 channel structures of mouse ( PDB ID: 6C9A) and Arabidopsis thaliana ( PDB ID: 5DQQ) were used as the templates to construct the human TPC2 channel structure ( PDB ID: 6NQ0). Despite the low sequence |
| 8 | 3p32 | - | https://ritdml.rit.edu/handle/1850/15250 | Mathematical Modeling and Screening of Ligand Binding Sites in Protein using the Tetrahedral Motif Method and Double-Centroid Representation | 2012 | VM Reyes - 2012 - ritdml.rit.edu | ... unannotated structures in PDB with unknown function to identify possible candidates that might have FMN bound to them. _ + ... Structures from the PDB for Screening using the screening procedure established for the above mathematical model for the binding site.[11] Page 19. ... |
| 9 | 3p32 | - | http://arxiv.org/abs/1602.08119 | Prediction of Flavin Mononucleotide (FMN) Binding Sites in Proteins Using the 3D Search Motif Method and Double-Centroid Reduced Representation of Protein 3D Structures | 2015 | A Banerjee, VM Reyes - arXiv preprint arXiv:1602.08119, 2015 - arxiv.org | ... Since this work utilizes the benefits of using a DCRR structure as opposed to a AAR structureas discussed above one of the very important steps is to convert the structures into DCRR onesfrom the default AAR structure given in PDB. There can be two ways of doing this. ... |
| 10 | 3p10 | 3mbm, 3q8h, 3qhd, 3p0z | http://commons.lib.niu.edu/handle/10843/21095 | L-Tryptophan hydroxamic acid derivatives as Burkholderia pseudomallei IspF inhibitors | 2017 | CA Muller - 2017 - commons.lib.niu.edu | bank ( PDB ) file of the Burkholderia pseudomallei IspF crystal structure (3P0Z) was uploaded to AutoDock Tools. The water molecules were removed from the enzyme, as well as any co- crystallized structures (FOL955 and cytidine) and free ions (K+ and Cl-). This cleaned up |