We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4MAQ | 2013 | 4 |
| 4M9A | 2013 | 4 |
| 4M16 | 2014 | 3 |
| 4M0J | 2013 | 4 |
| 4LW8 | 2013 | 2 |
| 4LVU | 2013 | 3 |
| 4LU4 | 2014 | 4 |
| 4LSO | 2014 | 7 |
| 4LSM | 2013 | 11 |
| 4LNE | 2013 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p10 | - | http://commons.lib.niu.edu/handle/10843/17504 | Characterization of The Binding Thermodynamics of Metal Cofactors to Burkholderia pseudomallei IspF | 2017 | KT Do - 2017 - commons.lib.niu.edu | ... catalytic function. Figure 1: Crystal structure of Burkholderia pseudomallei IspF (PDB: 3P10).Yellow spheres indicate catalytic Zinc ions. Page 7. The ... cyan). A single protein crystalstructure (PDB ID: 3P10) is, depicted for clarity. Key interactions ... |
| 2 | 3p10 | 3pk0, 3p32, 3p4i | http://scripts.iucr.org/cgi-bin/paper_yard?rr5017 | Significant reduction in errors associated with nonbonded contacts in protein crystal structures: automated all-atom refinement with PrimeX | 2012 | JA Bell, KL Ho, R Farid - Acta Crystallographica Section D: Biological Crystallography, 2012 - scripts.iucr.org | ... This requirement ensured that the test set deposited in the PDB was likely to be the one that was actually used in the refinement of the deposited coordinates. ... Table 1 Characteristics of ultrahigh-resolution protein structures. `Corrected', PDB code, Resolution (?), No. ... |
| 3 | 3p10 | - | http://www.sciencedirect.com/science/article/pii/S1047847712001608 | Identification and structural characterization of two 14-3-3 binding sites in the human peptidylarginine deiminase type VI | 2012 | R Rose, M Rose, C Ottmann - Journal of Structural Biology, 2012 - Elsevier | ... of structures ( [Schumacher et al., 2010a], [Schumacher et al., 2010b] and [Molzan et al., 2010]) (PDB IDs: 3NKX, 3O8I, 3IQV, 3LW1, 3IQU, 3IQJ, 3P10, 3P1Q, 3P1N, 3P1R, 3P1S, 3MHR), and which only yields crystals when a peptide is bound in the binding groove of 14-3-3 ?. ... |
| 4 | 3p0x | - | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6636315 | Predicting Protein-Ligand Binding Sites using Support Vector Machine with Protein Properties | 2013 | G Wong, F Leung, S Ling - 2013 - ieeexplore.ieee.org | ... The structure of proteins with bound ligands are obtained from the Protein Data Bank (PDB) [8], which ... First, the real binding sites are defined from PDB and each site is represented by a grid point in the center of it. ... They are 2cwh, 1g6c, 3p0x, 1wxg, 3kco, and 1k54. ... |
| 5 | 3p0x | - | https://www.nature.com/articles/s41467-019-12614-7 | Acetyl-CoA-mediated activation of Mycobacterium tuberculosis isocitrate lyase 2 | 2019 | RP Bhusal, W Jiao, BXC Kwai, J Reynisson- Nature, 2019 - nature.com | The structural resemblance of the Mtb ICL2 C-terminal domain to members of the GNAT observed in crystal structures of isocitrate-bound ICL1 from Brucella melitensis (Bm ICL1, PDB 3P0X ) of the active site loop are more similar to that found in the crystal structure of substrate |
| 6 | 3p0x | - | https://www.sciencedirect.com/science/article/pii/S0166685120300992 | Characterisation and structural analysis of glyoxylate cycle enzymes of Teladorsagia circumcincta | 2020 | S Umair, C Bouchet, N Palevich, HV Simpson- Molecular and Biochemical, 2020 - Elsevier | to compare the TciICL and TciMS protein sequences with deposited structures in the Protein Data Bank ( PDB ) Locations are shown of the C- and N-terminus in the predicted tertiary structure of TciICL C) and TciMS in salmon (F) within 4 of the superimposed 3P0X and 3S9Z |
| 7 | 3p0x | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1476-5381.2011.01629.x/full | Lifting the lid on GPCRs: the role of extracellular loops | 2012 | M Wheatley, D Wootten, MT Conner… - British journal of …, 2012 - Wiley Online Library | ... Family A GPCRs: ECL structural aspects. ... 2RH1); B, D3R (yellow; PDB accession 3PBL); C, A2A R (orange; PDB accession 2YDO); D, CXCR4 (green; PDB accession 3OE0). ... In contrast, theECL2 of the β 2 AR possess a radically different structure comprising a short α-helix that ... |
| 8 | 3p0x | - | http://ira.lib.polyu.edu.hk/handle/10397/35473 | Identification of protein-ligand binding site using machine learning and hybrid pre-processing techniques | 2015 | YKG Wong - 2015 - ira.lib.polyu.edu.hk | ... This type is suit- able if no structural information about the target is available. Another one isstructure- ... All this information can be found from the Protein Data Bank (PDB) [6] or Protein Qua-ternary Structure file server (PQS) [7], which show the atomic coordinates and the qua- ... |
| 9 | 3oxk | 3o0m, 3lb5, 3p0t, 3r6f | http://search.proquest.com/openview/a6bee6255f2ecb6acc21ab8e2dbd25bd/1?pq-origsi... | Structural Biology for Drug Design: Applications in Two Systems | 2016 | KM Maize - 2016 - search.proquest.com | ... Structurally, the purple HIT-like clade (4EGU, 3OXK) appears to be highly related to the known Hint proteins, whereas the remaining three HIT-like clades differ from the Hints by the addition of a long 12-15 residue C- terminal helix ... Sequence alignment alone fails to properly separate these two structural subclasses: those that draw the C-terminal helix from the same monomer (2EO4, 3LB5, 3P0T, 3O0M, 3NRD, 3OHE, 3I4S, and 3I24), and those that cross over to ... |
| 10 | 3oxk | - | http://scripts.iucr.org/cgi-bin/paper?hv9323 | Response to Errors in Crystal structure of HINT from Helicobacter pylori | 2016 | KF Tarique, S Devi, SA Abdul Rehman - Section F: Structural , 2016 - scripts.iucr.org | ... The confusion arises again from the various PDB entries where the same protein was namedas ... branch of the HIT family (http:// www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv ... has also beenidentified to contain purine nucleoside- and nucleotide- binding proteins' (3oxk; Lorimer et al ... |