We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3EZ4 | 2008 | 2 |
| 3EOO | 2008 | 17 |
| 3EOL | 2008 | 8 |
| 3ENN | 2008 | 5 |
| 3ENK | 2008 | 11 |
| 3EMJ | 2008 | 3 |
| 3EK2 | 2008 | 11 |
| 3EK1 | 2008 | 11 |
| 3EJ2 | 2008 | 4 |
| 3EJ0 | 2008 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ijp | 4ywj, 4f3y | https://www.sciencedirect.com/science/article/pii/S0006291X18316516 | 4-Hydroxy-tetrahydrodipicolinate reductase from Neisseria gonorrhoeae structure and interactions with coenzymes and substrate analog | 2018 | S Pote, SE Pye, TE Sheahan- Biochemical and, 2018 - Elsevier | In case of NgDapB, the position of the coenzyme is modeled using structure of PaDapB ( PDB ID from Bartonella henselae, Burkholderia thailandensis, Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Thermotoga maritima ( PDB IDs: 3IJP , 4F3Y, 1ARZ, 4YWJ, 3QY9, 1VM6). |
| 2 | 3ijp | - | http://www.sciencedirect.com/science/article/pii/S0014579311005503 | Structure and nucleotide specificity of< i> Staphylococcus aureus</i> dihydrodipicolinate reductase (DapB) | 2011 | TS Girish, V Navratna, B Gopal - FEBS letters, 2011 - Elsevier | ... from Escherichia coli, Mycobacterium tuberculosis, Thermotoga maritima and Bartonella henselae have been determined ( [10], [11] and [18]; PDB:1VM6 (Joint Centre for Structural Genomics) and PDB:3IJP (Seattle Structural Genomics Center for Infectious Disease). ... |
| 3 | 3ijp | - | http://search.proquest.com/openview/fe30810b9baec6939869fd9046280643/1?pq-origsi... | MOLECULAR MODELING AND DOCKING STUDIES OF DIHYDRODIPICOLINATE REDUCTASE ENZYME (DHDPR) OF STREPTOCOCCUS SUIS AND … | 2014 | ON Erick, MN Padmanabhan… - Advances in …, 2014 - search.proquest.com | ... The current study hypothesized to model structure for DapB gene encoding dihydrodipicolinatereductase enzyme ... et al., 1997 ; PDB:1VM6 (Joint Centre for Structural Genomics) and PDB:3IJP(Seattle Structural ... Structural and mutagenic analysis of relaxed nucleotide specificity. ... |
| 4 | 3ifg | - | http://dx.plos.org/10.1371/journal.pone.0009280 | The X-ray crystal structure of Escherichia coli succinic semialdehyde dehydrogenase; structural insights into NADP+/enzyme interactions | 2010 | CG Langendorf, TLG Key, G Fenalti, WT Kan? - PloS one, 2010 - dx.plos.org | ... Shortly after the human SSADH structure was published, the structure of SSADH from Burkholderia pseudomallei, without a substrate or cofactor (PDB ID: 3ifg and 3ifh), was deposited into the PDB by the Seattle Structural Genomic Centre for Infectious Disease. ... |
| 5 | 3iew | 3k2x | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.0c00877 | Benchmark Sets for Binding Hot Spot Identification in Fragment-Based Ligand Discovery | 2020 | AE Wakefield, C Yueh, D Beglov- Journal of Chemical, 2020 - ACS Publications | Binding hot spots are regions of proteins that, due to their potentially high contribution to the binding free energy, have high propensity to bind small molecules. We present benchmark sets for te... |
| 6 | 3iew | - | https://pointloma.whdl.org/sites/default/files/Harper-Synthesis%20and%20Computat... | Synthesis and Computational Analysis of Novel IspF Inhibitors | 2018 | D Harper, M Rouffet, L Votapka- Bulletin of the American, 2018 - pointloma.whdl.org | The crystal structure of IspF was taken from the Protein Data Bank, code 3iew .7 The first As for the protein, the monomer's crystal structure was cleaned and protonated with the H++ webserver (version 3.2).11 The . pdb file was manually edited to correct these protonation states |
| 7 | 3ief | 3knu | http://www.sciencedirect.com/science/article/pii/S0022283614005798 | Landscape of Intertwined Associations in Multi-Domain Homo-Oligomeric Proteins | 2015 | SS MacKinnon, SJ Wodak - Journal of molecular biology, 2015 - Elsevier | ... In addition, we identified protein structures in the PDB related to each member of our ... We examineddomain re-orientations in these relatives and how the quaternary structure is affected ... This allowedus to characterize the level of structural plasticity in protein families comprising ... |
| 8 | 3ief | 3m4s, 3mqw, 3m1x | https://repositorioinstitucionaluacm.mx/jspui/bitstream/123456789/86/3/Alma%20Ma... | Caracterizacin de la protena TV-PSP1 y su posible participacin en la degradacin del RNAm de tvcp39 en Trichomonas vaginalis | 2019 | AML Villalobos Osnaya - 2019 - repositorioinstitucionaluacm.mx | Tabla 4. Expresin de molculas en presencia y ausencia de Fe2+24 Tabla 5. Cdigos de PDB de protenas cristalizadas de la familia PSP26 structure of Tv-PSP1 with a molecular weight of 40.5 kDa. The secondary structure -- The table actually has an error for the 3ief organism :P |
| 9 | 3ido | - | http://scripts.iucr.org/cgi-bin/paper?pu5380 | Cloning, purification, crystallization and preliminary X-ray analysis of two low-molecular-weight protein tyrosine phosphatases from Vibrio cholerae | 2012 | S Nath, R Banerjee, S Khamrui, U Sen - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... Biol. 215, 403-410.] ) search for a homologous structure showed that the amino-acid sequence of VcLMWPTP-1 possesses the highest identity (43%) to that of protein tyrosine phosphatase from Entamoeba histolytica (PDB entry 3ido ; Seattle Structural Genomics Center for ... |
| 10 | 3ido | 3jvi | https://www.sciencedirect.com/science/article/pii/S1570963918302012 | Vibrio cholerae LMWPTP-2 display unique surface charge and grooves around the active site: Indicative of distinctive substrate specificity and scope to design specific | 2019 | S Chatterjee, S Nath, B Ghosh, U Sen- Biochimica et Biophysica Acta (BBA, 2019 - Elsevier | The surface properties of VcLMWTP-1, although have some distinct features, resembles closely to that of E. histolytica LMWPTP ( PDB : 3IDO ) This closure at the P-loop is also evident from the structural alignment with an 'open structure ' of apo-MPtpA ( PDB : 2LUO) [41] to the |