We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3nfw | - | http://aem.asm.org/content/79/10/3282.short | Camphor Pathway Redux: Functional Recombinant Expression of 2, 5-and 3, 6-Diketocamphane Monooxygenases of Pseudomonas putida ATCC 17453 with Their Cognate Flavin Reductase Catalyzing Baeyer-Villiger Reactions | 2013 | H Iwaki, S Grosse, H Bergeron, H Leisch? - Applied and Environmental Microbiology, 2013 - Am Soc Microbiol | ... The closest homolog whose structure has been determined is nitrilotriacetate monooxygenase component B (NTA-MoB) (189 amino acids) derived from Mycobacterium thermoresistibile that was characterized as a homodimer with a split-barrel motif typical of short-chain flavin reductases (PDB ID 3NFW) ... |
| 2 | 5umf | 3fdz | https://www.frontiersin.org/articles/10.3389/fcimb.2018.00352/full | CSGID Solves Structures and Identifies Phenotypes for Five Enzymes in Toxoplasma gondii | 2018 | E Filippova, AS Halavaty, G Minasov- Frontiers in cellular, 2018 - eprints.whiterose.ac.uk | Crystallography revealed insights into the overall structure , protein oligomeric states and molecular details of active sites important for ligand recognition The targets studied herein were crystallized and their structures characterized, as structural studies have |
| 3 | 4q1t | - | https://www.nature.com/articles/ncomms15179 | CRISPR-Cpf1 assisted genome editing of Corynebacterium glutamicum | 2017 | Y Jiang, F Qian, J Yang, Y Liu, F Dong, C Xu- Nature, 2017 - nature.com | ... 5b). Assuming that D154 and N155 of cgProB are part of the active site, 3D protein structure modelling indicated that five amino-acid residues (G149, G153, D154, N155, and D156) participate in a complex hydrogen-bonding network with L-proline (Fig. 5b). ... The three-dimensional structural model of cgProB was generated through homology modelling using the SWISS-MODEL server40,41,42 (https://swissmodel.expasy.org/). The available structure of btProB (PDB code: 4q1t, which shares 38% sequence similar |
| 4 | 3kre | - | http://www.freepatentsonline.com/y2019/0209499.html | COMPOUNDS WEAKENING SAICAR SYNTHETASE ACTIVITY AND APPLICATIONS | 2019 | W Pan, W Zhu- US Patent App. 16/334,256, 2019 - freepatentsonline.com | 3R9R), Thermotoga maritime (1KUT), Clostridium perfringens (3NUA), Ehrlichiachaffeensis ( 3KRE ), Geobacilluskaustophilus (2YWV basis of the above results, the crystal structure conformations in Saccharormyces cerevisiae ( PDB : 2CNQ) and Escherichia coli ( PDB : 2GQS) |
| 5 | 6dj8 | - | http://ej.kubagro.ru/2020/07/pdf/11.pdf | COMPARISON OF STRUCTURAL PROTEIN OF SILKWORM DENSOVIRUS BMDNV-1 WITH PROTEINS OF VIRUSES OF BACTERIA AND ARCHAEA TO STUDY THE POSSIBILITY OF FALSE POSITIVE ANSWERS IN THE ELISA - TESTING OF CATERPILLARS | 2020 | Antonovich ZA, Nazipova NN, ..., Scientific Journal of KubSAU , 2020 - ej.kubagro.ru | PDB . . , SMTL ID : 6dj8 .1 ( Structure of DNA polymerase III subunit beta from Borrelia burgdorferi) |
| 6 | 3i4t | 4dxl, 5v6d, 6c0e, 5tt0, 5ts3, 3ld9, 6b1p, 4h3z, 5ts2, 5cm7, 6c6b, 6b9u, 3und | https://digitalcommons.ncf.edu/theses_etds/5689/ | COMPARATIVE ANALYSIS OF CHARGE DISTRIBUTIONS IN HOMOLOGOUS THERMOPHILIC AND MESOPHILIC PROTEINS | 2019 | C Galvin - 2019 - digitalcommons.ncf.edu | the charge distributions in high quality crystal structures of 104 thermophilic and 118 mesophilic ( PDB entry 2CYA). Shown in cyan is a mesophilic homologue from humans ( PDB entry |
| 7 | 3e7d | 3uk1 | http://link.springer.com/article/10.1007/s00894-014-2136-5 | CH pi interactions in proteins: prevalence, pattern of occurrence, residue propensities, location, and contribution to protein stability | 2014 | M Kumar, PV Balaji - Journal of molecular modeling, 2014 - Springer | ... The coordinates of proteins included in the dataset were downloaded from the protein databank [33]. ... discoideum non-muscle type myosin-2 heavy chain (PDB id 3BZ9). ... Brucella abortus CobH, precorrin-8X methylmutase 3E7D D Phe16:CE1 Tyr12 2.83 1.84 172 66 ... |
| 8 | 4fry | - | http://www.sciencedirect.com/science/article/pii/S0003986113003202 | CBS domains: Ligand binding sites and conformational variability | 2013 | J Ere?o-Orbea, I Oyenarte, LA Mart?nez-Cruz - Archives of biochemistry and biophysics, 2013 - Elsevier | ... At present 120 crystal structures containing 52 different ligands have been reported in the protein data bank (PDB). Of these, 56 entries correspond to eukaryal, 47 to bacterial and 17 to archaeal proteins, respectively. Among ... |
| 9 | 6ws6 | - | https://www.frontiersin.org/articles/10.3389/fimmu.2021.652223/full | CAR-NK Cells Effectively Target SARS-CoV-2-Spike-Expressing Cell Lines In Vitro | 2021 | MT Ma, S Badeti, CH Chen, J Kim- Frontiers in, 2021 - frontiersin.org | Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) is highly contagious and presents a significant public health issue. Current therapies used to treat coronavirus disease 2019 (COVID-19) include monoclonal antibody cocktail, convalescent plasma, antivirals ... Plasmid construct of S309-CAR. The SFG retroviral vector contains the S309 single chain antibody fragment (accession code 6WS6 on PDB) |
| 10 | 4ed9 | - | http://link.springer.com/article/10.1007/s10545-013-9632-0 | C7orf10 encodes succinate-hydroxymethylglutarate CoA-transferase, the enzyme that converts glutarate to glutaryl-CoA | 2014 | S Marlaire, E Van Schaftingen… - Journal of inherited …, 2014 - Springer | ... Electrophoresis was performed with ≈50 μg protein for the Coomassie Blue stained gel and ≈5 μg (soluble proteins) or ≈1 ... The closest homologue of human C7orf10 for which a structure is available (4ED9) shares more than 40 % se- quence identity with the mammalian ... |