We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6bfu | - | https://www.nature.com/articles/s41594-020-0478-5 | A thermostable, closed SARS-CoV-2 spike protein trimer | 2020 | X Xiong, K Qu, KA Ciazynska, M Hosmillo- Nature Structural &, 2020 - nature.com | Structures of the disulfide-stabilized and non-disulfide-stabilized proteins reveal distinct closed and locked conformations of the S trimer with the target cell, and is a dominant target of the immune system 4 . S protein is trimeric and has two distinct structural statesprefusion ... porcine deltacoronavirus (PDCoV, a deltacoronavirus, PDBID: 6BFU). S proteins are structurally aligned based on S2. S protein trimers from all 4 genera of |
| 2 | 4h3e | - | http://onlinelibrary.wiley.com/doi/10.1002/qua.24650/full | A theoretical study on the reaction pathways of peroxynitrite formation and decay at nonheme iron centers | 2014 | AA Attia, R Silaghi-Dumitrescu - International Journal of Quantum Chemistry, 2014 - Wiley Online Library | ... The quantum chemical calculations were performed on four chemical models. These models comprised the active sites of SOR from Pyrococcus furiosus (PDB id 1DQI) and FeSOD from Trypanosoma cruzi (PDB id 4H3E) in their ferrous and ferric forms. ... |
| 3 | 4pq9 | - | http://www.sciencedirect.com/science/article/pii/S0959440X14000815 | A sweet new wave: structures and mechanisms of enzymes that digest polysaccharides from marine algae | 2014 | JH Hehemann, AB Boraston, M Czjzek - Current opinion in structural , 2014 - Elsevier | ... CAZy family, Protein, PDB codes. GH16, -Carrageenase (Pseudoaltermonas carragenovora), 1DYP. -Agarase ... -Porphyranase B (Zobellia galactanivorans), 3JUU. -1,3-Glucanase (Mycobacterium marinum M), 4PQ9. Laminarinase (Thermotoga ... |
| 4 | 4pq9 | - | http://www.jbc.org/content/early/2019/09/09/jbc.RA119.010619.short | A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16) | 2019 | AH Viborg, N Terrapon, V Lombard, G Michel- Journal of Biological, 2019 - ASBMB | by the presence of numerous helical elements on the core -jelly-roll fold, two in the N-terminal region and four in the C- terminal region, most of which are located on the opposite side of the structure from the active A tryptophan (W154 in PDB ID 4PQ9 (unpublished)) present |
| 5 | 4xwi | - | https://www.tandfonline.com/doi/abs/10.1080/14756366.2020.1751150 | A study of Rose Bengal against a 2-keto-3-deoxy-d-manno-octulosonate cytidylyltransferase as an antibiotic candidate | 2020 | S Kim, S Jo, MS Kim, DH Shin- Journal of enzyme inhibition and, 2020 - Taylor & Francis | The atomic coordinates of the crystal structure of PaKdsB ( PDB ID: 4XWI ) were saved from the Protein Data Bank and prepared by The crystal structure of PaKdsB deposited in the Protein Data Bank was retrieved and docked with Rose Bengal to predict its binding mode |
| 6 | 5ify | - | https://www.sciencedirect.com/science/article/pii/S007961071830172X | A structural and functional perspective on the enzymes of Mycobacterium tuberculosis involved in the L-rhamnose biosynthesis pathway | 2018 | DK Dhaked, MB Divya, L Guruprasad- Progress in Biophysics and, 2018 - Elsevier | Some representative crystal structures of RmlA-D were retrieved from PDB and were compared with the models constructed The structure superposition of some known RmlAs (PDB_IDs: 1FXO, 1IIM, 1H5T, 3PKP, 5IFY and 6B5E) revealed their highly similar structures |
| 7 | 3ek1 | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/febs.14497 | A selective determination of the catalytic cysteine pKa of 2cysteine succinic semialdehyde dehydrogenase from Acinetobacter baumannii using burst kinetics and | 2018 | J Phonbuppha, S Maenpuen- The FEBS, 2018 - Wiley Online Library | An AbSSADH homology model was built based on the aldehyde dehydrogenase X-ray structure ( PDB : 3EK1 ) which Based on sequence homology with E. coli GabD for which the structure is known ( PDB :3JZ4), residues Cys75 and |
| 8 | 4g5d | 4gie | http://www.biochemj.org/content/475/16/2593.abstract | A role for trypanosomatid aldo-keto reductases in methylglyoxal, prostaglandin and isoprostane metabolism | 2018 | AJ Roberts, J Dunne, P Scullion, S Norval- Biochemical, 2018 - biochemj.org | Multiple sequence alignment of SakRI, TcAKR (TcCLB.511287.49), LiPGFS1 (LinJ.31.2210), LiPGFS2 (LinJ.32.0470) and TbPGFS (Tb927.11.4700). The conserved AKR catalytic tetrad identified in T. brucei is marked by the red boxes. Blue boxes indicate solvent accessible cysteine residues identified in the crystal structures of TbPGFS TcAKR and LiPGFS2 (PDB accession numbers 1VBJ, 4GIE and 4G5D) [27]. Orange box highlighting Y51C allelic variation was observed in CL-Brener. |
| 9 | 6x79 | - | https://www.biorxiv.org/content/10.1101/2021.02.17.431625v1.abstract | A rigorous framework for detecting SARS-CoV-2 spike protein mutational ensemble from genomic and structural features | 2021 | S Fatihi, S Rathore, A Pathak, D Gahlot, M Mukerji- bioRxiv, 2021 - biorxiv.org | Cryo-EM structures of the D614G spike structure have revealed that the mutant D614 is stable with RBD in an up mational states of the spike were analysed (see Methods for PDB ids) spike conformers showed large structural changes, with an average deviation of 2.77 0.42 ... 18 cryo-EM structures for closed spike conformation (PDB ID: 6ZGE, 6VXX, 6X2C, 6X6P, 6X29, 6X79, 6XF5, 6XLU, 6XM5, 6ZB4, 6ZB5, 6ZGI, 6ZP0, 7CAB, 7DDD, 7DF3, 7JJI and 7JWY) were taken from RCSB P |
| 10 | 6tys | - | https://www.nature.com/articles/s41467-024-48601-w | A potent Henipavirus cross-neutralizing antibody reveals a dynamic fusion-triggering pattern of the G-tetramer | 2024 | P Fan, M Sun, X Zhang, H Zhang, Y Liu, Y Yao- Nature, 2024 - nature.com | Top (a) and side (b) views of the crystal structure of the NiV BD G HD /1E5 Fab complex. G HD /EB2 ( PDB ID: 2VSM) and G HD /m102.3 ( PDB ID: 6CMI) structures ... Prediction of G-F interactions based on Discovery Studio The GHD (PDB ID: 2VSM) and sF (PDB ID: 6TYS) proteins were docked using the Dock Proteins protocol (ZDOCK) in Discovery Studio 4.5. |