We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YL5 | 2025 | 0 |
| 7K5Z | 2020 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6x79 | - | https://www.biorxiv.org/content/10.1101/2021.02.17.431625v1.abstract | A rigorous framework for detecting SARS-CoV-2 spike protein mutational ensemble from genomic and structural features | 2021 | S Fatihi, S Rathore, A Pathak, D Gahlot, M Mukerji- bioRxiv, 2021 - biorxiv.org | Cryo-EM structures of the D614G spike structure have revealed that the mutant D614 is stable with RBD in an up mational states of the spike were analysed (see Methods for PDB ids) spike conformers showed large structural changes, with an average deviation of 2.77 0.42 ... 18 cryo-EM structures for closed spike conformation (PDB ID: 6ZGE, 6VXX, 6X2C, 6X6P, 6X29, 6X79, 6XF5, 6XLU, 6XM5, 6ZB4, 6ZB5, 6ZGI, 6ZP0, 7CAB, 7DDD, 7DF3, 7JJI and 7JWY) were taken from RCSB P |
| 2 | 6tys | - | https://www.nature.com/articles/s41467-024-48601-w | A potent Henipavirus cross-neutralizing antibody reveals a dynamic fusion-triggering pattern of the G-tetramer | 2024 | P Fan, M Sun, X Zhang, H Zhang, Y Liu, Y Yao- Nature, 2024 - nature.com | Top (a) and side (b) views of the crystal structure of the NiV BD G HD /1E5 Fab complex. G HD /EB2 ( PDB ID: 2VSM) and G HD /m102.3 ( PDB ID: 6CMI) structures ... Prediction of G-F interactions based on Discovery Studio The GHD (PDB ID: 2VSM) and sF (PDB ID: 6TYS) proteins were docked using the Dock Proteins protocol (ZDOCK) in Discovery Studio 4.5. |
| 3 | 3ndn | - | https://www.nature.com/articles/s42003-025-08051-6 | A pH-dependent direct sulfhydrylation pathway is required for the pathogenesis of Mycobacterium tuberculosis | 2025 | VK Nain, V Barik, M Pandey, M Pareek- Communications, 2025 - nature.com | For system preparation, the crystal structure of putative O-succinyl homoserine sulfhydrylase of M. tuberculosis was retrieved from RCSB PDB 56 ( PDB -ID: 3NDN 57 ). The protein has 4 |
| 4 | 3ecd | 3h7f | http://www.biomedcentral.com/1472-6750/14/93 | A novel serine hydroxymethyltransferase from Arthrobacter nicotianae: characterization and improving catalytic efficiency by rational design | 2014 | W Jiang, L Chen, S Yuan, B Li, Z Liu - BMC biotechnology, 2014 - biomedcentral.com | ... directed mutagenesis was indicated on the three-dimensional structure of AnSHMT, which wasconstructed from the known x-ray structure of Burkholderia Pseudomallei MycobacteriumTuberculosis T.Th.Hb8 (PDB entry 3H7F, 2DKJ and 3ECD) using Swiss ... |
| 5 | 3rmi | - | https://uwc-usa.academia.edu/Bar%C4%B1%C5%9FEkim/Drafts | A novel entropy-based hierarchical clustering framework for ultrafast protein structure search and alignment | 2016 | B Ekim - academia.edu | ... Four uncharacterized proteins (1IVZ, 3B4Q, 3DDE, and 4RGI) and their closest structural neighbors (2E7V, 3RMI, 3HLX, and 5BV3, respectively), printed as output by Esperite (Cosine distance between any one of the pairs were 0.0), and to be investigated further through protein nuclear magnetic resonance spectroscopy. ... |
| 6 | 6vju | - | https://www.biorxiv.org/content/10.1101/2020.12.23.424250v1.abstract | A novel deep-sea bacterial threonine dehydratase drives cysteine desulfuration and hydrogen sulfide production | 2020 | N Ma, Y Sun, W Zhang, C Sun- bioRxiv, 2020 - biorxiv.org | of psTD with mutation of R77E (R is mutated to E; PDB 7DAR) was also solved for 156 comparison 1P5J, 6VJU (1P5J: Ser dehydratase, 6VJU : Cys synthase), which is directly opened to 193 methods. Based on the structure of psTD, its mutant and complex with PLP, we 231 |
| 7 | 2kn9 | - | https://www.biorxiv.org/content/10.1101/2020.10.27.356691v1.abstract | A new twist of rubredoxin function in M. tuberculosis | 2020 | T Sushko, A Kavaleuski, I Grabovec, A Kavaleuskaya- bioRxiv, 2020 - biorxiv.org | 21]. Previously, a zinc-substituted RubB structure was solved by NMR ( PDB ID: 2KN9 ). Pairwise . In the NMR model, residues at C and N termini show backbone variability, while the rest of the structure remain almost unperturbed |
| 8 | 2kok | - | http://link.springer.com/article/10.1007/s10142-012-0296-x | A new arsenate reductase involved in arsenic detoxification in Anabaena sp. PCC7120 | 2013 | S Pandey, AK Shrivastava, VK Singh, R Rai… - Functional & integrative …, 2013 - Springer | ... b Structure-based multiple sequence alignment of All0195 homologs. ... 261278552 |
| 9 | 6tys | - | https://www.nature.com/articles/s41594-025-01598-2 | A nanobody-based therapeutic targeting Nipah virus limits viral escape | 2025 | A Isaacs, GV Nieto, X Zhang, N Modhiran- Nature Structural &, 2025 - nature.com | Data Bank ( PDB ) 5EVM) and other antibody-bound NiV F structures ( PDB 6TYS and 7UPD) to a previously determined cryo-EM structure of apo F ( PDB 8DNG), which faces inward |
| 10 | 3p96 | - | https://www.nature.com/articles/s42003-023-05402-z | A morpheein equilibrium regulates catalysis in phosphoserine phosphatase SerB2 from Mycobacterium tuberculosis | 2023 | E Pierson, F De Pol, M Fillet, J Wouters- Communications Biology, 2023 - nature.com | structure 14 ( PDB : 3P96 ). The residues are exposed to solvent and not engaged in intramolecular interactions. The difference in numbering comes from the fact that MaSerB bears two |