We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6NUP | 2019 | 0 |
| 6O3F | 2019 | 0 |
| 6O4N | 2019 | 0 |
| 6OE6 | 2019 | 0 |
| 6OHZ | 2019 | 0 |
| 3TRR | 2011 | 0 |
| 6OKH | 2019 | 0 |
| 6ONN | 2019 | 0 |
| 6OR9 | 2019 | 0 |
| 6OTJ | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ezl | - | http://dx.plos.org/10.1371/journal.pone.0119771 | Structure, Dynamics, and Interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 Examined by Molecular Modeling, Simulation, and Electrostatic … | 2015 | I Bhutani, S Loharch, P Gupta, R Madathil, R Parkesh - PloS one, 2015 - dx.plos.org | ... and Lys-418 based on the active site residues of the templates (PDB ID: 4F4Q ... Another interestingobservation was high structural similarity of generated three-dimensional structure of DprE2 withSDR family members such as acetoacetyl-coA reductase (PDBID: 3EZL, rmsd: 3.43 ... |
| 2 | 3fvb | 4di0 | https://tspace.library.utoronto.ca/handle/1807/69450 | Understanding the Encapsulins | 2015 | D Radford - 2015 - tspace.library.utoronto.ca | ....The Dps-like bacterioferritin-like family was defined as the set of proteins similar to the Brucella melitensis biovar Abortus 2308 bacterioferritin [PDB accession: 3FVB] .. Lastly the rubrerythrin-like family was defined as the set of proteins similar to the Burkholderia pseudomallei rubrerythrin [PDB accession: 4DI0], and N-terminal domains of the Ferroglobus placidus DSM 10642 encapsulin ... |
| 3 | 3k31 | - | http://link.springer.com/article/10.1007/s12154-015-0135-3 | Prediction of protein targets of kinetin using in silico and in vitro methods: a case study on spinach seed germination mechanism | 2015 | SP Kumar, VR Parmar, YT Jasrai… - Journal of Chemical …, 2015 - Springer | ... 3 Enoyl-(acyl-carrier protein) reductase Anaplasma phagocytophilum (strain HZ) 3K31 0.25 0.39 ...similarity methods prioritized probable protein targets available from spinach PDB proteome. ...ligand similarity with caffeine, availability of yeast experi- mental structure complex with ... |
| 4 | 3oc6 | - | https://scholarworks.iupui.edu/handle/1805/7949 | Computational protein design: assessment and applications | 2015 | Z Li - 2015 - scholarworks.iupui.edu | ... 53 xiii Page 14. Figure 3.8 Superposition of the target structures ( PDB ID 3PTE and 1B1U, cyan) ... These interactions are utilized in protein structure prediction and protein design. ... structural topology and function through evolution. Experimental techniques, such as ... |
| 5 | 3uam | - | http://repository.dl.itc.u-tokyo.ac.jp/dspace/handle/2261/60455 | Studies on structures of novel sugar metabolic enzymes | 2015 | - 2015 - repository.dl.itc.u-tokyo.ac.jp | ... Page 10. 4 Table 1-1 Classification of structure-known LPMOs. Organisms Protein Name FamilyPDB Fungi Hypcrea jecorina GH61B AA9 2VTC Thielavia terrestris GH61E AA9 3EII, 3EJA ...Burkholderia pseudomallei CBM33 AA10 3UAM 1-1-2 Enzymes in Leloir pathway ... |
| 6 | 3o0h | - | http://krishikosh.egranth.ac.in/handle/1/94711 | Structure function studies of enzymes involved in scavenging ROS in Oryza sativa to avoid abiotic stress | 2015 | B Pani - 2015 - krishikosh.egranth.ac.in | ... analysis against PDB (http://www.rcsb.org/) to identify suitable templates for ... The pair-wise 3-D structural alignment and RMSD of the equivalent C atoms, of the model and template was performed using MATRAS (MArkovianTRAnsition of Structure evolution) web ... |
| 7 | 4i1v | - | http://dx.plos.org/10.1371/journal.pone.0129600 | Tethering of Epidermal Growth Factor (EGF) to Beta Tricalcium Phosphate (βTCP) via Fusion to a High Affinity, Multimeric βTCP-Binding Peptide: Effects on … | 2015 | LM Alvarez, JJ Rivera, L Stockdale, S Saini, RT Lee… - PloS one, 2015 - dx.plos.org | ... The TT motif has been implicated in the interactions of dephospho-CoA kinases with the diphosphate group of adenosine di-phosphate (ADP) through hydrogen bonding mechanisms (PDB ID#s: 1JJV, 4I1V; [83]), suggesting a potential role for the TT motif in our binding peptide for interaction with calcium phosphate ... |
| 8 | 4f4e | - | http://journals.iucr.org/d/issues/2015/03/00/dz5356/dz5356bdy.html | Crystal structure and enzymatic properties of a broad substrate-specificity psychrophilic aminotransferase from the Antarctic soil bacterium Psychrobacter sp. B6 | 2015 | A Bujacz, M Rutkiewicz-Krotewicz… - Biological …, 2015 - journals.iucr.org | ... PDB references: PsyArAT, 4rkc complex with aspartate, 4rkd [Cited in] [Download citation ... Crystalstructure and enzymatic properties of a broad substrate-specificity psychrophilic ... Here, geneisolation, protein expression, purification, enzymatic properties and structural studies are ... |
| 9 | 4pca | - | http://www.jbc.org/content/early/2015/05/15/jbc.M115.660829.short | Structure and Biophysical Characterization of the S-adenosylmethionine Dependent O-methyltransferase PaMTH1, a Putative Enzyme Accumulating during … | 2015 | D Chatterjee, D Kudlinzki, V Linhard, K Saxena… - Journal of Biological …, 2015 - ASBMB | ... α2 Page 7. Structure and Biophysical characterization of PaMTH1 7 loop ... Arg232, Asp235).CCoAOMT (Medicago sativa) is (PDB:1SUI) one of the closest structural homologueof PaMTH1 and also crystallizes as a dimer. The dimerization ... |
| 10 | 2mj3 | - | https://www.duo.uio.no/handle/10852/45840 | Structural and functional characterisation of ferredoxins in Bacillus cereus | 2015 | S Monka - 2015 - duo.uio.no | ...as well as testing out models generated from several homologous PDB-structures. This server generated models from 10 PDB files (1I7H, 3AH7, 3ZYY, 1KRH, 3N9Z, 2MJ3, 3HUI, 2Y5C, 1JQ4, 2WLB15) and generated two models from each by using two different programs SCULPTURE and MOLREP. ... |