We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6OZD | 2019 | 0 |
| 3TLF | 2011 | 0 |
| 6PI4 | 2019 | 0 |
| 3T5S | 2011 | 0 |
| 6Q10 | 2019 | 0 |
| 6Q1Y | 2019 | 0 |
| 6TYJ | 2020 | 0 |
| 6UCZ | 2019 | 0 |
| 6UDE | 2019 | 0 |
| 6UDG | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3glq | - | http://or.nsfc.gov.cn/bitstream/00001903-5/230830/1/1000014634423.pdf | Inexpensive method for selecting receptor structures for virtual screening | 2015 | Z Huang, CF Wong - Journal of chemical information and modeling, 2015 - or.nsfc.gov.cn | ... 1LI4, 1V8B, 1XWF, 2H5L, 2ZIZ, 2ZJ0, 2ZJ1, 3CE6, 3D64b, 3DHY, 3G1U, 3GLQ, 3H9U, 3N58 ...the results for docking 152 actives and 9942 decoys to 36 crystal structures for BRAF. For thissystem, the SPI identified the best structure (PDB id 3IDP) for virtual screening as the other ... |
| 2 | 4qtp | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Discovery of antigens for early detection of Mycobacterium avium subsp. paratuberculosis and analysis of characteristics using bioinformatics tools. | 2015 | HT Park, HE Park, MK Shin, YI Cho - Korean Journal of , 2015 - search.ebscohost.com | ... MAP MAP0380 coding anti-sigma factor antagonist protein(PDB ID: 4qtp,TM-score ... 1. Three-dimensional structure prediction using I-TASSER server. ... MAP1204p60 domain (PDB ID: 3i86, TM-score: 0.547), sequence identity 100 ... |
| 3 | 3k9h | - | http://www.jbc.org/content/early/2015/06/08/jbc.M115.649632.short | Molecular anatomy of ParA-ParA and ParA-ParB interactions during plasmid partitioning | 2015 | A Volante, JC Alonso - Journal of Biological Chemistry, 2015 - ASBMB | ... Superimposition of full-length monomer structures of δ (in green) and T thermophilus Soj (ParA-Sm) in blue (PDB: 2BEK); with P1-ParA in yellow (PDB: 3EZ6); and with TP228-ParF (ParA-Sm) in orange (PDB: 3K9H)... |
| 4 | 3e5y | - | http://link.springer.com/article/10.1007/s12038-015-9554-0 | Analysis of coreperiphery organization in protein contact networks reveals groups of structurally and functionally critical residues | 2015 | AE Isaac, S Sinha - Journal of biosciences, 2015 - Springer | ... residues are in the innermost cores, suggesting that the network core is critically important in maintaining the structural stability of ... 2.1 Protein structure analysis. ... set of 66 non-redundant protein structures obtained from the Protein Data Bank ( http://www.rcsb.org/pdb ) that include ... For the exceptions, viz., proteins with PDB ids 1a30, 1aac, 1auw, 1cbr, 1vl4, 3e5y and 3js3, we verified that those proteins among this group ( |
| 5 | 4lfy | - | https://tspace.library.utoronto.ca/handle/1807/70867 | STRUCTURE DETERMINATION AND BIOCHEMICAL CHARACTERIZATION OF NOVEL HUMAN UBIQUITIN-LIKE DOMAINS. | 2015 | RS Doherty - 2015 - tspace.library.utoronto.ca | ... Table 3.2: Secondary structure elements of NFATc2IP, ubiquilin-1, ubiquitin and SUMO1/2/3. ...Table 3.4: UIM:ubiquitin complexes deposited in the PDB, along with UIM sequence ... ubiquitin,along with the number of supporting publications and supporting structural complexes that ... |
| 6 | 4pca | - | http://www.jbc.org/content/early/2015/05/15/jbc.M115.660829.short | Structure and Biophysical Characterization of the S-adenosylmethionine Dependent O-methyltransferase PaMTH1, a Putative Enzyme Accumulating during … | 2015 | D Chatterjee, D Kudlinzki, V Linhard, K Saxena… - Journal of Biological …, 2015 - ASBMB | ... α2 Page 7. Structure and Biophysical characterization of PaMTH1 7 loop ... Arg232, Asp235).CCoAOMT (Medicago sativa) is (PDB:1SUI) one of the closest structural homologueof PaMTH1 and also crystallizes as a dimer. The dimerization ... |
| 7 | 3k31 | - | http://link.springer.com/article/10.1007/s12154-015-0135-3 | Prediction of protein targets of kinetin using in silico and in vitro methods: a case study on spinach seed germination mechanism | 2015 | SP Kumar, VR Parmar, YT Jasrai… - Journal of Chemical …, 2015 - Springer | ... 3 Enoyl-(acyl-carrier protein) reductase Anaplasma phagocytophilum (strain HZ) 3K31 0.25 0.39 ...similarity methods prioritized probable protein targets available from spinach PDB proteome. ...ligand similarity with caffeine, availability of yeast experi- mental structure complex with ... |
| 8 | 3ujh | - | http://dx.plos.org/10.1371/journal.pone.0125831 | Evidence for Positive Selection within the PgiC1 Locus in the Grass Festuca ovina | 2015 | Y Li, B Canbäck, T Johansson, A Tunlid, HC Prentice - 2015 - dx.plos.org | ... 0.45 Å root-mean-square deviations for the backbone atoms from the template Toxoplasma 3ujh.pdb structure. ... of the candidate sites in the homology-modeled PGIC1 3-D structure, it can ...For comparative purposes, the 3-D protein structural locations of the PGI amino acid sites ... |
| 9 | 3dmo | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2863/full | Crystal structures of MBP fusion proteins | 2015 | DS Waugh - Protein Science, 2015 - Wiley Online Library | ... 65 Nineteen of the MBP fusion protein structures deposited in the PDB include surface ... Table 2. Surface Entropy Reduction Mutations in MBP and Their Participation in Crystal Contacts 3DMO D83A/K84A ... |
| 10 | 3s4k | - | https://oaktrust.library.tamu.edu/handle/1969.1/156485 | Biosynthesis and Cellular Actions of Bioactive Natural Products | 2015 | S Mori - 2015 - oaktrust.library.tamu.edu | The structure of AziG was determined using the molecular replacement method, with Mycobacterium tuberculosis thioesterase (PDB ID: 3S4K) as the model. |