We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6O3F | 2019 | 0 |
| 6O4N | 2019 | 0 |
| 6OE6 | 2019 | 0 |
| 6OHZ | 2019 | 0 |
| 6OKH | 2019 | 0 |
| 6ONN | 2019 | 0 |
| 6OR9 | 2019 | 0 |
| 6OTJ | 2019 | 0 |
| 6PI4 | 2019 | 0 |
| 6Q10 | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3k2h | - | http://www.theses.fr/2015STRAF059 | Characterization of natural product biological imprints for computer-aided drug design applications | 2015 | N Sturm - 2015 - theses.fr | ... Changes in sequence and structure also explain the poor similarity between SB4 inhibitor-binding sites in Mitogen-activated protein (MAP) kinase 14 and MAP kinase 1 (PDB codes: 1bl7, 3erk), and between the antifolate LYA-binding site in human and protozoan thymidylate synthases (PDB codes: 1juj, 3k2h). ... |
| 2 | 3uf8 | - | http://bioinformatics.oxfordjournals.org/content/early/2015/03/22/bioinformatics... | AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain–domain interaction prediction | 2015 | D Xu, L Jaroszewski, Z Li, A Godzik - Bioinformatics, 2015 - Oxford Univ Press | ... the first domain in SMT fusion Peptidyl-prolyl cis-trans isomerase (PDB ID 3uf8, chain A ... For example, the linker between the two domains in scFv-IL-1B complex (PDB ID 2kh2 ... for assembly of independently determined domains than for domains extracted from the structure of the ... |
| 3 | 3men | - | http://www.sciencedirect.com/science/article/pii/S1093326315300668 | Homology modeling of parasite histone deacetylases to guide the structure-based design of selective inhibitors | 2015 | J Melesina, D Robaa, RJ Pierce, C Romier - Journal of Molecular , 2015 - Elsevier | ... Wizard (Schrdinger Inc.) by adding hydrogen atoms, defining the protonation states of residuesand minimising the structure to remove steric ... Number, Organism/protein name, Abbreviation,PDB ID. ... 10, Burkholderia pseudomallei acetylpolyamine aminohydrolase, BpAPAH, 3MEN ... |
| 4 | 4f2n | - | http://journals.cambridge.org/abstract_S0031182015000219 | Imidazole-containing phthalazine derivatives inhibit Fe-SOD performance in Leishmania species and are active in vitro against visceral and mucosal leishmaniasis | 2015 | M Sánchez-Moreno, F Gómez-Contreras… - Parasitology, 2015 - Cambridge Univ Press | .. The Fe-SOD enzymes structure were obtained from the Brookhaven protein data bank (entry 2gpc for Trypanosoma cruzi and entry 4F2N for Leishmania, corresponding to L. major, as it is the only published structure for a Leishmania species) and their energies were minimized ... |
| 5 | 3d5t | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24743/full | Structures of citrate synthase and malate dehydrogenase of Mycobacterium tuberculosis | 2015 | DM Ferraris, R Spallek, W Oehlmann… - Proteins: Structure, …, 2015 - Wiley Online Library | ... thermophilus (4KDE), Thermus flavus (1BDM), Aquaspirillum articum (1B8P), and Burkholderiapseudomallei (3D5T). ... RMSD = 1.4 Å) and malate dehydrogenase from T. flavus (PDB code =1BMD ... The structure of M. tuberculosis malate dehydrogenase shows the presence of a ... |
| 6 | 4qtp | - | http://kjvr.org/upload/2015/06/25/20150625103448248200.pdf | Mycobacterium avium subsp. paratuberculosis 감염 초기 개체 검출을 위한항원 탐색 및 특성 분석 | 2015 | 박홍태， 박현의， 신민경， 조용일， 유한상 - Korean J Vet Res, 2015 - kjvr.org | ... MAP의 MAP0380 유전자가 coding하고 있는 anti-sigma factor antagonist protein(PDB ID: 4qtp,TM-score ... 1. Three-dimensional structure prediction using I-TASSER server. ... 백질은 MAP1204의p60 domain으로 나타났는데(PDB ID: 3i86, TM-score: 0.547), sequence identity가 100 ... |
| 7 | 3dah | - | http://link.springer.com/article/10.1007/s00792-014-0726-x | Structure of dimeric, recombinant Sulfolobus solfataricus phosphoribosyl diphosphate synthase: a bent dimer defining the adenine specificity of the substrate ATP | 2015 | RW Andersen, LL Leggio, B Hove-Jensen, A Kadziola - Extremophiles, 2015 - Springer | ... 1 3 structure of PRPP synthase of the thermophilic, metha- nogenic archaeon M. jannaschii istetrameric and appears to be built by two dimers ... 2007), and the Gram-negative Betaproteobacterium Burkholderia (Pseudomonas) pseudomallei (PDB code 3DAH) have hex ... |
| 8 | 4pca | - | http://www.jbc.org/content/early/2015/05/15/jbc.M115.660829.short | Structure and Biophysical Characterization of the S-adenosylmethionine Dependent O-methyltransferase PaMTH1, a Putative Enzyme Accumulating during … | 2015 | D Chatterjee, D Kudlinzki, V Linhard, K Saxena… - Journal of Biological …, 2015 - ASBMB | ... α2 Page 7. Structure and Biophysical characterization of PaMTH1 7 loop ... Arg232, Asp235).CCoAOMT (Medicago sativa) is (PDB:1SUI) one of the closest structural homologueof PaMTH1 and also crystallizes as a dimer. The dimerization ... |
| 9 | 4kyx | - | http://www.nature.com/ncomms/2015/150804/ncomms8871/full/ncomms8871.html | Crystal structure, biochemical and cellular activities demonstrate separate functions of MTH1 and MTH2 | 2015 | M Carter, AS Jemth, A Hagenkort, BDG Page… - Nature …, 2015 - nature.com | ... The structure was solved by molecular replacement of the template structure file with PDB ID 4KYX using MolRep, and Arp/wARP was used for building the initial model, followed by iterative building cycles using the Refine program in Phenix ... |
| 10 | 3s4k | - | https://oaktrust.library.tamu.edu/handle/1969.1/156485 | Biosynthesis and Cellular Actions of Bioactive Natural Products | 2015 | S Mori - 2015 - oaktrust.library.tamu.edu | The structure of AziG was determined using the molecular replacement method, with Mycobacterium tuberculosis thioesterase (PDB ID: 3S4K) as the model. |