We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7U0U | 2022 | 0 |
| 7U0T | 2022 | 0 |
| 9ZK6 | 2025 | 0 |
| 7U0S | 2022 | 0 |
| 7U0O | 2023 | 0 |
| 7U0M | 2022 | 0 |
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| 7TXX | 2022 | 0 |
| 7TWZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3uf8 | 4ijn, 4lfy, 4l83, 4i1i, 4lsm, 4k73, 4ecp, 4gnv, 4kzk, 3uw1, 4e4t, 3v2i, 4jqp, 3uw3, 4f3n, 3vav, 4lhr, 3ecd, 3quv, 3qh8, 3cxk, 3mxu, 3oc9, 3pme, 3nfw | https://scripts.iucr.org/cgi-bin/paper?xh5047 | Identifying and quantifying radiation damage at the atomic level | 2015 | M Gerstel, CM Deane, EF Garman- Journal of synchrotron radiation, 2015 - scripts.iucr.org | PDB structures contain occupancy values outside the valid probability range: the structure variance of different packing density metrics applied to the 2,704 selected PDB structures . |
| 2 | 3eom | 3pfd, 3swo, 4n5f | http://scripts.iucr.org/cgi-bin/paper?S1399004715006616 | 3-Sulfinopropionyl-coenzyme A (3SP-CoA) desulfinase from Advenella mimigardefordensis DPN7T: crystal structure and function of a desulfinase with an acyl-CoA … | 2015 | M Schürmann, R Meijers, TR Schneider… - … Section D: Biological …, 2015 - scripts.iucr.org | ... (2011). Acta Cryst. D67, 235-242.] ) with the crystal structure of an acyl-CoAdehydrogenase from Thermus thermophilus HB8 (PDB entry 1ukw ; RIKEN StructuralGenomics/Proteomics Initiative, unpublished work) as the search model. ... |
| 3 | 3ek1 | 3i44 | http://www.sciencedirect.com/science/article/pii/S0009279715000101 | Residues that influence coenzyme preference in the aldehyde dehydrogenases | 2015 | L González-Segura, H Riveros-Rosas… - Chemico-biological …, 2015 - Elsevier | ... enzymes. 2. Methods. 2.1. Structural comparisons. Structural comparisons of the ALDHcrystal structures available in the PDB were made using PyMOL (http://www.pymol.org) and Coot [10]. 2.2. Sequence analyses. ALDH amino ... |
| 4 | 4o6r | 4kna, 3i44, 3ek1 | http://www.sciencedirect.com/science/article/pii/S0009279715000253 | Amino acid residues that affect the basicity of the catalytic glutamate of the hydrolytic aldehyde dehydrogenases | 2015 | RA Muñoz-Clares, L González-Segura… - Chemico-Biological Interactions, 2015 - Elsevier | ... groups as sticks with carbon atoms colored depending on the structure, oxygen in ... Family organism,enzyme (PDB code), pH crystal c, pK a, Hydrogen bond d ... Burkholderia cenocepacia, BCAM0469,AMP-complex (4O6R), 6.5, 7.42, Cys302↓ Gly270↓/Lys178↓ Glu399↑ Glu476 ... |
| 5 | 4h4g | 3p0x, 3p4t, 3e5b, 3i4e, 3oib | http://search.proquest.com/openview/9b52df086a0858392215929c4a0b2187/1?pq-origsi... | Structure of the Vibrio cholerae fatty acid regulator FadR | 2015 | W Shi - 2015 - search.proquest.com | ... 3D6X, 1ZHG, 3DOY, 3DOZ, 3DP0, 3DP1, 3DP2, 3DP3, 3CF8, 3CF9, 3ED0, 3B7J, 3D04, 3AZ9,3AZ8, 3AZA, 3AZB, 4H4G, 2OKH, 2OKI ... (52, 70) and DNA-bound (PDB 1H9T and 1HW2) (69,70) structures are almost identical whereas the ligand-bound structure shows the ... |
| 6 | 3dmo | 3mc4, 3laa, 3gir, 3qk8, 3l3b, 3kre, 3oc7, 3ixc, 3kzx, 3eiz, 3o0h, 3mqw, 3md7, 3pzy, 3o0k, 3fq3, 3mxu, 3mdx, 3js5, 3gp3, 3qhx, 3o0m, 3js4, 3o38, 3mqd, 3qlj, 3qd5, 3nrr, 3ndo, 3qbp, 3ol3, 3r6f, 3p32, 3lv0, 3njd, 3mpz, 3lqw, 3gwa, 3quv, 3dms, 3kzu, 3p2y, 3nfw, 3lnc, 3eg4, 3gbz, 3k31, 3fs2, 3qh4, 3oc9, 3ipw, 3pgx, 3oa3, 3h81, 3h7f, 3enk, 3ld3, 3k9w, 3oj7, 3lr4, 3oj6, 3gwc, 3i3f, 3ek2, 3oks, 3ngj, 3pk0, 3n5o, 3moy, 3qxz, 3cxk, 3ngf, 3ndn, 3e7d, 3ii9, 3meb, 3oec, 3nwo, 3qat, 3pe8, 3k2c, 3fvb, 3lb5, 3r1i, 3p0t, 3krs, 3hgb, 3f0d, 3ecd, 3mx6, 3gvg, 3p4t, 3myb, 3kxq, 3krb | http://search.proquest.com/openview/6d1f24bc5507d574e710805358571132/1?pq-origsi... | Rare Sidechain Conformations in Proteins and DNA | 2015 | BJ Hintze - 2015 - search.proquest.com | ... Ponder and Richards in 1987 (Ponder and Richards, 1987), and they are important. tools in structural biology (Dunbrack, 2002). ... the Protein Data Bank ( PDB ) (Berman, 2000). ... 2010; Winn et al., 2011), protein structure prediction and design (Bower et al., 1997; ... |
| 7 | 3fdz | 3ezn | http://search.proquest.com/openview/4de212650c142a0818d74dc9ee7da4f8/1?pq-origsi... | Computational methods & forcefields for protein design, structure prediction, & refinement with natural & modified amino acids | 2015 | GA Khoury - 2015 - search.proquest.com | ... These were assessed by aligning the modied and unmodied structures containedinthe PDB with each other. (B) Structural similarity between the unmodied structure(U-PDB) and states of unmodied structure simulation (S1). ... |
| 8 | 3h81 | 3swx, 3oc7, 3myb, 4g7f, 4je1, 3moy, 3p5m, 4di1, 3pe8, 3trr, 3tlf, 3rsi, 3rrv, 3njb, 3ome, 3p85, 3n5o, 3q1t, 4hdt, 3t3w, 3he2, 4f82, 3lg6, 3qxi, 3qka, 3r0o, 3qxz, 3qmj, 3r6h, 3r9q, 3qre, 3r9s, 3r9t, 3qyr, 3qk8 | http://search.proquest.com/openview/0cb26ac6fdfa1ff7a54fca188db46fb4/1?pq-origsi... | Development and optimization of a clustering process that utilizes active site features to identify functionally relevant groups within protein superfamilies | 2015 | JB Leuthaeuser - 2015 - search.proquest.com | ... Key residues are identified from structural overlays ... Two protein structures of interest (3H8A blueand 2AKM purple) are aligned to a protein structure (1OEP gray ... In addition to forming ASPs, DASPcan also search the PDB and GenBank (NCBI protein) databases for proteins with ... |
| 9 | 3d53 | 3oc6 | http://pubs.rsc.org/en/content/articlehtml/2015/sc/c5sc01065a | Enzyme repurposing of a hydrolase as an emergent peroxidase upon metal binding | 2015 | N Fujieda, J Schätti, E Stuttfeld, K Ohkubo, T Maier… - Chemical …, 2015 - pubs.rsc.org | ... These wild-type proteins or their single mutant isoforms (pdb code: 3D53, 2F99, 1JSY, 1FHI(bearing a Q83E mutation), 1MEJ ... yellow sticks); (B) close-up view of the Cu1 binding site inCu·6-PGLac (PDB code 4TM7 ... The X-ray structure was refined to a resolution of 1.39 Å (Fig. ... |
| 10 | 3i4e | 3p0x, 3oq8, 3eol, 3e5b | http://www.hindawi.com/journals/bmri/2015/895453/abs/ | Potential Inhibitors for Isocitrate Lyase of Mycobacterium tuberculosis and Non-M. tuberculosis: A Summary | 2015 | YV Lee, HA Wahab, YS Choong - BioMed Research International, 2015 - hindawi.com | ... 1F8M [5]], Escherichia coli [PDB id: 1IGW [6]], Burkholderia pseudomallei [PDB id: 3I4E (paperunpublished ... crystal structure using Ligand Fit module of Discovery Studio 2.1 software (PDB id1F8M ... View at Scopus; V. Sharma, S. Sharma, KHZ Bentrup et al., “Structure of isocitrate ... |