We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p32 | - | https://ritdml.rit.edu/handle/1850/15250 | Mathematical Modeling and Screening of Ligand Binding Sites in Protein using the Tetrahedral Motif Method and Double-Centroid Representation | 2012 | VM Reyes - 2012 - ritdml.rit.edu | ... unannotated structures in PDB with unknown function to identify possible candidates that might have FMN bound to them. _ + ... Structures from the PDB for Screening using the screening procedure established for the above mathematical model for the binding site.[11] Page 19. ... |
| 2 | 3dms | - | http://pubs.acs.org/doi/abs/10.1021/bi300483w | Induced Fit and the Catalytic Mechanism of Isocitrate Dehydrogenase | 2012 | S Gon?alves, SP Miller, MA Carrondo, AM Dean? - Biochemistry, 2012 - ACS Publications | ... To date, there are 27 crystal structures of E. coli isocitrate dehydrogenase in the Protein Data Bank (Table 3). Burkholderia pseudomallei Strain 1710b (UNIPROT Q3JV82), 74.2% identity 3dms 71 1.65 2011 0.92 0.62 ... |
| 3 | 2khr | 2kvc | http://search.proquest.com/openview/fc1652af707b4e47ebd729008cd8ea6d/1?pq-origsi... | Investigating conformational transitions of proteins by coarse-grained elastic network models | 2012 | M Tekpinar - 2012 - search.proquest.com | The model is the green tube representation and the target ( PDB ID: 1LST) is the dark blue tube. Residues 91 B- factors show that each atom in the structure is dynamic in side chains of their amino acids. However, some conformations can have large structural |
| 4 | 3pgz | - | http://dx.plos.org/10.1371/journal.pone.0041894 | Crystal Structure of a Monomeric Thiolase-Like Protein Type 1 (TLP1) from Mycobacterium smegmatis | 2012 | N Janardan, RK Harijan, RK Wierenga, MRN Murthy - PloS one, 2012 - dx.plos.org | ... DALI search using this domain against the PDB shows structural similarities to a molybdenum binding protein (PDB id: 1H9K) [20] and a single strand DNA binding protein (PDB id: 3PGZ) (Seattle Structural Genomics Center for Infectious Disease; Unpublished). ... |
| 5 | 3u03 | - | http://www.hindawi.com/journals/ipid/2012/843509/abs/ | Pyoverdine, the Major Siderophore in Pseudomonas aeruginosa, Evades NGAL Recognition | 2012 | ME Peek, A Bhatnagar, NA McCarty? - Interdisciplinary Perspectives on Infectious Diseases, 2012 - hindawi.com | ... Recently, Strong and coworkers crystallized NGAL bound to pyochelin (PDB 3U03, deposited at the RCSB protein data bank) and the crystal structure clearly shows that pyochelin docks inside the calyx of NGAL but without binding avidly. ... |
| 6 | 3ijp | - | http://www.sciencedirect.com/science/article/pii/S1046592812001878 | Comparative Structure and Function Analyses of Native and His-Tagged forms of Dihydrodipicolinate Reductase from Methicillin-Resistant Staphylococcus aureus | 2012 | C Dogovski, SR Dommaraju, LC Small? - Protein Expression and Purification, 2012 - Elsevier | ... of DHDPR from five bacterial species have been determined by X-ray crystallography, namely from E. coli [25] and [26] (PDB ID: 1ARZ), M. tuberculosis[27] (PDB ID: 1C3V), T. maritima (PDB ID: 1VM6), Bartonella hensalae (PDB ID: 3IJP) and more recently from S. aureus COL ... |
| 7 | 3slg | - | http://pubs.acs.org/doi/abs/10.1021/bi301135b | Human UDP-?-d-xylose Synthase and Escherichia coli ArnA Conserve a Conformational Shunt That Controls Whether Xylose or 4-Keto-Xylose Is Produced | 2012 | SJ Polizzi, RM Walsh Jr, WB Peeples, JM Lim? - Biochemistry, 2012 - ACS Publications | ... Recently, the Seattle Structural Genomics Center for Infectious Disease deposited the atomic coordinates of an annotated UGA decarboxylase from Burkholderia pseudomallei (PDB entry3SLG) which conserves the same proline packing surface associated with the ... |
| 8 | 3gvg | - | http://www.sciencedirect.com/science/article/pii/S0300908412002696 | Crystal structures of triosephosphate isomerase from methicillin resistant< i> Staphylococcus aureus</i> MRSA252 provide structural insights into novel modes of ligand binding and unique conformations of catalytic loop | 2012 | S Mukherjee, A Roychowdhury, D Dutta, AK Das - Biochimie, 2012 - Elsevier | ... Structural homologues to SaTIM in PDB were searched by the BLASTP server [46 ... sequence alignment of amino acid residues of SaTIM (3M9Y) with TIM from Bacillus stearothermophilus (2BTM), Thermotoga maritima (1B9B), Mycobacterium tuberculosis (3GVG), Vibrio marinus ... |
| 9 | 3krs | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24001/full | Asparagine and glutamine differ in their propensities to form specific side chain-backbone hydrogen bonded motifs in proteins | 2012 | PG Vasudev, M Banerjee? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... acts as the hydrogen bond acceptor. In the available data set of 24 TIM crystal structures, there are three examples with Asn at 119, all of which (PDB IDs:1O5X, 3KRS, 1AW1) exhibit similar motifs. Interestingly, three examples with Gln at position 119 illustrated in ... |
| 10 | 3p96 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24101/full | Crystal structure of tandem ACT domain-containing protein ACTP from Galdieria sulphuraria | 2012 | E Bitto, DJ Kim, CA Bingman, HJ Kim? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... domains of other proteins including glycine cleavage system transcriptional regulator GcvR (PDB id: 1u8s; unpublished data), formyltetrahydrofolate deformylase (PDB id: 3nrb, 3n0v, and 3lou; unpublished data), and phosphoserine phosphatase SerB (PDB id: 3p96).16 The ... |