We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3uf8 | - | http://ico2s.org/data/papers/Lee2012c.pdf | An Approximated Voxel Approach for the Identification and Modelling of Ligand-Binding Sites | 2012 | LW Lee, A Bargiela - Journal of Physical Science and Application, 2012 - ico2s.org | ... selected. These proteins are given as [PDB: 1FKF, 1BKF, 1YAT, 3VAW, 3UF8, 1C9H]. ... (a) (b) Fig. 14 (a) Screenshot of FK506-bound protein 3UF8 from the RCSB PDB with ligand site shown, (b) screenshot of the identified site from the voxel-based approximated method. ... |
| 2 | 3meq | - | http://d-nb.info/1035623692/34 | Reaction and protein engineering employing a carbonyl reductase from candida parapsilosis | 2012 | A Jakoblinnert, UDMB Ansorge-Schumacher - 2012 - d-nb.info | ... Four X-ray templates were selected for modeling the CPCR1 structure (349aa): Yeast ADH I from S. cerevisiae with bound trifluorethanol (347 residues with quality score 0.522, PDB ID 2HCY), ADH from Brucella melitensis (341 residues with quality score 0.590, PDB ID 3MEQ), ... |
| 3 | 3pgz | - | http://dx.plos.org/10.1371/journal.pone.0041894 | Crystal Structure of a Monomeric Thiolase-Like Protein Type 1 (TLP1) from Mycobacterium smegmatis | 2012 | N Janardan, RK Harijan, RK Wierenga, MRN Murthy - PloS one, 2012 - dx.plos.org | ... DALI search using this domain against the PDB shows structural similarities to a molybdenum binding protein (PDB id: 1H9K) [20] and a single strand DNA binding protein (PDB id: 3PGZ) (Seattle Structural Genomics Center for Infectious Disease; Unpublished). ... |
| 4 | 3m1x | 3gp3 | https://pdfs.semanticscholar.org/b88b/677bceb020a7b157a866e774007d27e673e9.pdf | Expanding molecular modeling and design tools to non-natural sidechains. | 2012 | D Gfeller, O Michielin, V Zoete - J Comput Chem. 2012 Jul 5;33(18):1525-35. | Supplementary Figures 1JBO, 1KTP, 1PHN, 1QGW, 1XF6, 1XG0, 2BV8, 2C77, 2V8A, 2VJH, 2VJT, 3BRP, 3DBJ, 3O18, 3O2C |
| 5 | 3ek2 | - | https://opus.uni-wuerzburg.de/opus4-wuerzburg/files/7086/Thesis_MariaHirschbeck_... | Structure-based drug design on the enoyl-ACP reductases of Yersinia pestis and Burkholderia pseudomallei | 2012 | MW Hirschbeck - opus.uni-wuerzburg.de | ... In the PDB database an apo structure of BpFabI had already been deposited (PDB code 3EK2), which was crystallized in 10% PEG 6000 and 100 mM HEPES pH 7.0. ... |
| 6 | 3ek2 | 3k2e, 3grk | http://www.sciencedirect.com/science/article/pii/S096921261200130X | < i> Staphylococcus aureus</i> FabI: Inhibition, Substrate Recognition, and Potential Implications for In Vivo Essentiality | 2012 | J Schiebel, A Chang, H Lu, MV Baxter, PJ Tonge? - Structure, 2012 - Elsevier | ... bacteria harbor an alanine at this position and, thus, lack the required hydrogen bond acceptor (Figure 3). Consistently, all structurally characterized FabIs from gram-negative organisms contain just a single flexible SBL (PDB codes 2JJY, 2P91, 2WYU, 3EK2, 3GRK, and 3K2E ... |
| 7 | 3ftp | - | http://pubs.acs.org/doi/abs/10.1021/bi3015554 | Discovery of an L-Fucono-1, 5-Lactonase from cog3618 of the Amidohydrolase Superfamily | 2012 | ME Hobbs, MW Vetting, HJ Williams? - Biochemistry, 2013 - ACS Publications | ... monomeric ensemble model generated by an overlay of the structures represented by PDB IDs Page 10 of 56 ACS Paragon Plus Environment ... Initial phases for unliganded BmulJ_04919 were determined by MR using MOLREP and a tetrameric search model (3FTP) (22). ... |
| 8 | 3eg4 | - | http://dx.plos.org/10.1371/journal.pone.0031133 | Tetrahydrodipicolinate N-Succinyltransferase and Dihydrodipicolinate Synthase from Pseudomonas aeruginosa: Structure Analysis and Gene Deletion | 2012 | R Schnell, W Oehlmann, T Sandalova, Y Braun? - PloS one, 2012 - dx.plos.org | ... In addition, the coordinates for DapD from Campylobacter jejuni (2RIJ), Enterococcus feacalis (3CJ8), Brucella melitensis (3EG4), and Yersinia ... model of the trimer of the putative tetrahydropyridine-2-carboxylate N-succinyltransferase from Campylobacter jejuni (PDB code ... |
| 9 | 3js4 | - | http://escholarship.org/uc/item/2t44h65b.pdf | Highly Active Yeast MnSOD has a Novel Mechanism Involving Six-coordinate Mn (3+) Species | 2012 | Y Sheng - 2012 - escholarship.org | ... The enzyme structures of four classes of SOD. (A) Homo sapien CuZnSOD (pdb code: 1PU0); (B) Streptomyces coelicolor NiSOD (pdb code: 1T6U); (C) Saccharomyces cerevisiae MnSOD (pdb code: 3LSU); (D) Anaplasma phagocytophilum FeSOD (pdb code: 3JS4). Page 22. ... |
| 10 | 3ido | - | http://scripts.iucr.org/cgi-bin/paper?pu5380 | Cloning, purification, crystallization and preliminary X-ray analysis of two low-molecular-weight protein tyrosine phosphatases from Vibrio cholerae | 2012 | S Nath, R Banerjee, S Khamrui, U Sen - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... Biol. 215, 403-410.] ) search for a homologous structure showed that the amino-acid sequence of VcLMWPTP-1 possesses the highest identity (43%) to that of protein tyrosine phosphatase from Entamoeba histolytica (PDB entry 3ido ; Seattle Structural Genomics Center for ... |