We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2kok | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2011.07882.x/full | Corynebacterium glutamicum survives arsenic stress with arsenate reductases coupled to two distinct redox mechanisms | 2011 | AF Villadangos, K Van Belle, K Wahni? - Molecular Microbiology, 2011 - Wiley Online Library | ... fold (left) as representative for the ArsC1' subgroup of arsenate reductases (B), and R773 Ec_ArsC (PDB ID 1I9D ... R773 (Ec_ArsC), Vibrio cholerae [Vc_ArsC (VCV511445)], Streptococcus mutans strain UA159 [(Sm_ArsC (SMU_1651)] and Brucella mellitensis 2KOK (Bm_ArsC ... |
| 2 | 3gka | - | http://onlinelibrary.wiley.com/doi/10.1002/cctc.201100141/full | Stereopreferences of Old Yellow Enzymes: Structure correlations and sequence patterns in enoate reductases | 2011 | G Oberdorfer, G Steinkellner, C Stueckler? - ChemCatChem, 2011 - Wiley Online Library | ... Table 1. Protein structures used for comparison and cluster generation. Proteins, PDB accession code, Residues (Tyr/Phe/Ile) [a], Stereospecificity [b], Pseudo-atom distance [c] [?], Cluster. ... N-ethylmaleimide reductase, 3gka, Tyr?Tyr, R (ee=62 %)/S [e], 7.5, ... |
| 3 | 3enk | - | http://www.sciencedirect.com/science/article/pii/S0003269710007165 | Highly selective l-threonine 3-dehydrogenase from< i> Cupriavidus necator</i> and its use in determination of l-threonine | 2011 | T Ueatrongchit, Y Asano - Analytical Biochemistry, 2011 - Elsevier | ... BaGluE, UDP-glucose 4-epimerase from Bacillus anthracis (2C20); BpGluE, UDP-glucose 4-epimerase from Burkholderia pseudomallei (3ENK); SvDHT, DTDP-glucose 4,6-dehydratase from Streptomyces venezuelae (1R66); ... |
| 4 | 3kw3 | - | http://www.biomedcentral.com/1471-2180/11/116 | The crystal structure of alanine racemase from Streptococcus pneumoniae, a target for structure-based drug design | 2011 | H Im, ML Sharpe, U Strych, M Davlieva? - BMC Microbiology, 2011 - biomedcentral.com | ... of this enzyme from a further six microorganisms have been deposited in the PDB: Bartonella henselae (PDB ID 3KW3), Oenococcus oeni ... are listed in Table 1. Structure factors and final atomic coordinates for AlrSP have been deposited in the Protein Databank (PDB ID: 3S46). ... |
| 5 | 3gaf | - | http://insubriaspace.cineca.it/handle/10277/445 | New microbial hydroxysteroid dehydrogenases and their synthetic application for the selective modification of bile acids. | 2011 | EE Ferrandi - 2011 - insubriaspace.cineca.it | ... but it has been hypothesized that binding of bile acids to hydrophobic pocket(s) of the proteasesmay destabilize their structure, making additional ... Bile salts are used for the structural rigidity ofthe steroid skeleton, which allows the formation of stable cavities, and because both ... |
| 6 | 3ndn | - | http://digitalcommons.unl.edu/chemistrydiss/21/ | Purification of Lysine Decarboxylase: A Model System for PLP Enzyme Inhibitor Development and Study | 2011 | LC Zohner - 2011 - digitalcommons.unl.edu | ... This is inferred from the crystal structure of a bond phosphono-analogue of L-alanine (pdb 1BD0). ... contrast to 2.6 ?, for the aspartate oxygen-pyridine nitrogen in the crystal structure of ornithine decarboxylase from Lactobacillus (pdb ID 1ORD), hinting that hydrogen ... |
| 7 | 3qbp | 3qh8 | http://dl.acm.org/citation.cfm?id=2213792 | Protein surface characterization using an invariant descriptor | 2011 | ZA Deeb, DA Adjeroh, BH Jiang - Journal of Biomedical Imaging, 2011 - dl.acm.org | ... 1. Introduction The Protein Data Bank (http://www.pdb.org/pdb/home/ home.do) (PDB) currently has more than 3000 protein struc- tures classified as uncharacterized or as proteins of unknown function. This is about 5% of the total structures in PDB. ... |
| 8 | 2ke0 | 2l2s, 3k2c, 2ko7 | http://www.ingentaconnect.com/content/ben/cmc/2011/00000018/00000035/art00003 | Insights into immunophilin structure and function | 2011 | C Lucke, M Weiwad - Current medicinal chemistry, 2011 - ingentaconnect.com | ... 18, No. 35 L?cke and Weiwad Table 1. List of FKBP Structure Coordinates Available in the RCSB Database name organism UniProtKB residues mutation(s) PDB ID method resolution ligand(s) reference ... FKBP burkholderia pseudomallei Q63J95 1-113 2KE0 NMR SSGCIDa ... |
| 9 | 3oec | - | http://www.jbc.org/content/286/42/37011.short | Biochemical Studies and Ligand-bound Structures of Biphenyl Dehydrogenase from Pandoraea pnomenusa Strain B-356 Reveal a Basis for Broad Specificity of the Enzyme | 2011 | S Dhindwal, DN Patil, M Mohammadi? - Journal of Biological Chemistry, 2011 - ASBMB | ... PDB code 1BDB and BphB B-356 are shown in black color, and other structures are shown in light colors. These PDB codes are: 2HQ1, 3OEC, 3PKO, 2UVD, 2PNF, 2WSB, 1YDE, 2WDZ, 1HDC, and 1NFR. Reactivity of BphB B-356 with Polychlorinated Biphenyls. ... |
| 10 | 3emj | 3ld3, 3lo0, 3gvf, 3fq3 | http://www.doria.fi/handle/10024/69593 | The Structural Basis for inorganic Pyrophosphatase Catalysis and Regulation | 2011 | H Tuominen - 2011 - doria.fi | ... In addition, the PPase structures from five other species (Anaplasma phagocytophilum, Ehrlichia chaffeensis, Burkholderia pseudomallei, Brucella melitensis and Rickettsia prowazekii) (PDB ID: 3LD3, 3LO0, 3GVF, 3FQ3 and 3EMJ, respectively) obtained in the latest structural ... |