We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3GKA | 2009 | 11 |
| 3GAF | 2009 | 10 |
| 3K2H | 2009 | 11 |
| 3JS4 | 2009 | 8 |
| 3GMT | 2009 | 9 |
| 3EOL | 2008 | 8 |
| 3DMS | 2008 | 5 |
| 3DMO | 2008 | 14 |
| 3F0G | 2008 | 8 |
| 3F0F | 2008 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3tde | 3rv2, 3s82, 3iml | https://uknowledge.uky.edu/pharmacy_etds/106/ | Toward an Enzyme-coupled, Bioorthogonal Platform for Methyltransferases: Probing the Specificity of Methionine Adenosyltransferases | 2019 | TD Huber - 2019 - uknowledge.uky.edu | 4.4.5 Protein crystallization, data collection, and structure refinement ..... 105 reported similar promiscuity for the archael Sulfolobus solfataricus MAT (sMAT) and, notably, the corresponding first structural elucidation for a thermostable MAT (sMAT, PDB ID 4HPV) |
| 2 | 3tsc | 3sx2, 4rgb, 3uve, 5ej2, 3t7c, 3pxx, 3s55 | https://d-nb.info/125273736X/34 | Discovery and biosynthesis of the redox cofactor mycofactocin | 2021 | LA Pea Ortiz - d-nb.info | scale that will advance our research on the three-dimensional structure and the enzymology PDB ID NA when not reported as crystalized. * means enzymatic activity studies performed |
| 3 | 7ki4 | 7ki6 | https://advanced.onlinelibrary.wiley.com/doi/abs/10.1002/advs.202501996 | Potent Crossneutralizing Antibodies Reveal Vulnerabilities of Henipavirus Fusion Glycoprotein | 2025 | Y Ren, P Fan, X Zhang, T Fang, Z Chen- Advanced, 2025 - Wiley Online Library | structure of LayV F ( PDB ID: 8FEL). The root mean square deviation between the model and the reference LayV F or an incomplete postfusion NiV F ( PDB from the PDB database onto This study also used 6TYS, 7KI4, 7KI6, 7UOP, 7UP9, 7UPA, 7UPK, 7UPB, 7UPD, 6T3F, 8FEL, 8DMJ, and 7FAB from the Protein Data Bank. The data that support the findings of this study are available from the corresponding author upon reasonable request. |
| 4 | 7jzl | 7jzn | https://pmc.ncbi.nlm.nih.gov/articles/PMC12308813/ | Exploring the Intrinsic Structural Plasticity and Conformational Dynamics of Human Beta Coronavirus Spike Glycoproteins | 2025 | YF e Silva, HH Fokoue- Journal of Chemical, 2025 - pmc.ncbi.nlm.nih.gov | Such information was related to each PDB -ID, but within the trimeric bound structures , we evaluate whether each protomer has interactions with the ligands by calculating the number of |
| 5 | 6tys | 7ki6, 7ki4 | https://www.sciencedirect.com/science/article/pii/S016635422500141X | A monoclonal antibody targeting conserved regions of pre-fusion protein cross-neutralizes Nipah and Hendra virus variants | 2025 | T Li, H Xu, M Zhang, J Nie, B Liao, J Xie, Y Jiang, Y Liu- Antiviral Research, 2025 - Elsevier | The mAbs developed in this study and their conserved cross-neutralizing epitopes elucidated by structural analysis may contribute to the control of highly pathogenic HNV outbreaks. ... Local resolution estimation and filtering were performed using CryoSPARC. The cryo-EM structure of the NiV-F ectodomain (Protein Data Bank [PDB]: 6TYS) and crystal structure of the Fab (PDB: 7EJY) were aligned with the cryo-EM density map using UCSF Chimera |
| 6 | 6c87 | 6byq, 6nab, 6dbb | https://search.proquest.com/openview/cd4a41694b18b16f6cb97e7640174525/1?pq-origs... | Exploring Unconventional Approaches to Molecular Replacement in X-ray Crystallography with SIMBAD | 2020 | AJ Simpkin - 2020 - search.proquest.com | to finding search models for MR is to use the sequence of the target structure to identify a approach is based on the assumption that sequence similarity is a useful guide to structural similarity final step is a brute-force search of a non-redundant derivative of the PDB provided by |
| 7 | 3lnc | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4631842 | Zno-S. Cerevisiae: An Effective Growth Promoter of Astragalus Memeranaceus and Nano-Antibacterial Agent Against Fusarium Oxysporum by Improving Trifolirhizin | 2023 | Y Su, W Yang, R Wang, H Zhang, J Meng- Available at SSRN - papers.ssrn.com | 3D crystal structures were imported into , PDB ID: 3o7q was selected for MFS transporter, guanylate kinase based 607 on PDB ID: 3lnc , sedoheptulose-bisphosphatase based on PDB |
| 8 | 3tzs | 3tf6 | http://www.pnas.org/content/early/2015/07/30/1508902112.short | Siderocalin-mediated recognition, sensitization, and cellular uptake of actinides | 2015 | BE Allred, PB Rupert, SS Gauny… - Proceedings of the …, 2015 - National Acad Sciences | ... molecules from available crystal structures (the structures described in this work plus PDB (41)accession ... 1 × 8U, 3FW4, 3FW5, 3HWE, 3HWF, 3HWG, 3K3L, 3PEC, 3PED, 3TF6, 3TZS, 3UOD,and ... of key calyx residues, colored as in H, isolated from the 73-structure superposition ... |
| 9 | 3lrf | - | https://www.sciencedirect.com/science/article/pii/S1093326323001638 | Identification of novel compounds against Acinetobacter baumannii 3-oxoacyl-[acyl-carrier-protein] synthase I (FabB) via comprehensive structure-based computational approaches | 2023 | E Albayrak, S Koer, O Mutlu- Journal of Molecular Graphics and Modelling, 2023 - Elsevier | FabB from Vibrio cholerae ( PDB ID: 4XOX ) was selected as a template structure with 57.46% identity for the homology modeling. After modeling, GMQE (Global Model Quality Estimate) ... |
| 10 | 7kno | 5vpv, 7l3q, 7kvy, 7knp, 7kq6, 5u29, 5k85, 5ifi, 5k8f | https://search.proquest.com/openview/f05e6d587d92dab80626ff10c57e339a/1?pq-origs... | Discovery of Acetyl CoA Synthetase and SARS-CoV-2 Protease Inhibitors | 2023 | TE Esan - 2023 - search.proquest.com | Small molecule compounds were identified as a hit in an NMR-based screening, which was followed by validation with biochemical and structural characterization. Fragments were |