We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5UJU | 2017 | 0 |
| 5UM0 | 2017 | 0 |
| 5UNL | 2017 | 0 |
| 5UXV | 2018 | 0 |
| 5V0R | 2017 | 0 |
| 5V0U | 2017 | 0 |
| 5V77 | 2017 | 0 |
| 5VA8 | 2017 | 0 |
| 5VC2 | 2017 | 0 |
| 5VIX | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3krs | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24001/full | Asparagine and glutamine differ in their propensities to form specific side chain-backbone hydrogen bonded motifs in proteins | 2012 | PG Vasudev, M Banerjee? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... acts as the hydrogen bond acceptor. In the available data set of 24 TIM crystal structures, there are three examples with Asn at 119, all of which (PDB IDs:1O5X, 3KRS, 1AW1) exhibit similar motifs. Interestingly, three examples with Gln at position 119 illustrated in ... |
| 2 | 3ndn | - | http://pubs.acs.org/doi/abs/10.1021/bi201090n | Characterization of the Side-Chain Hydroxyl Moieties of Residues Y56, Y111, Y238, Y338, and S339 as Determinants of Specificity in E. coli Cystathionine beta-Lyase | 2011 | PH Lodha, SM Aitken - Biochemistry, 2011 - ACS Publications | ... figure Scheme 2. Observed Contacts of the PLP-AVG External Aldimine Active Site of eCBL a. a The dotted lines represent putative hydrogen bond distances of ?3.3 ? between heteroatoms. The image was constructed using ChemDraw and PDB entry 1CL2.(3). ... |
| 3 | 5el0 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25869 | An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45. | 2019 | PI Koukos, J Roel-Touris, F Ambrosetti, C Geng- bioRxiv, 2019 - biorxiv.org | For the server submission of target 134, we modelled the protein on PDB entry 4d07 and the peptide on 4d07 and 4qh8, threading the target sequence on the peptide structure of the templates 5el0 and followed similar strategies as for target 134. Template-based targets |
| 4 | 3r2v | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2361/abstract | Structural templates for modeling homodimers | 2013 | PJ Kundrotas, IA Vakser, J Janin - Protein Science, 2013 - Wiley Online Library | ... (3sb9). 37 The other four exceptions (3r2v, 3ra5, 3qlm, 4dz2) are likely to be monomers ... Science 338:1042- 1046. 4. Berman H, Henrick K, Nakamura H, Markley JL (2007) The worldwide ProteinData Bank (wwPDB): ensuring a single, uniform archive of PDB data. ... |
| 5 | 3eon | - | http://pubs.acs.org/doi/pdf/10.1021/cr900368a | Update 1 of: Proteases universally recognize beta strands in their active sites | 2011 | PK Madala, JDA Tyndall, T Nall, DP Fairlie - Chemical Reviews, 2011 - ACS Publications | ... All endoprotease complexes deposited in the Protein Data Bank (PDB http://www.rcsb.org/pdb mir- rored at http://oca.wehi.edu.au:8383/oca/22) through July 2009 were included in this study, updated with only a few key structures beyond that date. ... |
| 6 | 3men | - | http://pubs.acs.org/doi/abs/10.1021/bi101859k | Structure of Prokaryotic Polyamine Deacetylase Reveals Evolutionary Functional Relationships with Eukaryotic Histone Deacetylases | 2011 | PM Lombardi, HD Angell, DA Whittington, EF Flynn? - Biochemistry, 2011 - ACS Publications | The recently solved X-ray crystal structure of the Burkholderia pseudomallei APAH dimer (PDB ID: 3MEN; 34% sequence identity with M. ramosa APAH) contains a 16-residue L2 loop insertion (A79−R101) between helices B2 and B3. |
| 7 | 6tys | - | https://www.nature.com/articles/s41467-023-36995-y | Structural basis for antibody recognition of vulnerable epitopes on Nipah virus F protein | 2023 | PO Byrne, BE Fisher, DR Ambrozak, EG Blade- Nature, 2023 - nature.com | The initial model for NiV F was PDB ID 6TYS . Homology models for the Fabs were generated using ABodyBuilder 66 . Initial models were docked into the cryo-EM maps using Chimera. |
| 8 | 3laa | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1462-5822.2011.01711.x/full | Analysis of the BadA stalk from Bartonella henselae reveals domain‐specific and domain‐overlapping functions in the host cell infection process | 2012 | PO Kaiser, D Linke, H Schwarz, JC Leo… - Cellular …, 2012 - Wiley Online Library | ... The structures are the YadA head (PDB ID: 1PH9) of Y. enterocolitica (Nummelin et al., 2004),the BpaA head ... structural motifs matches the colouring of the schematic diagram in A. The depictedstructural motifs of 3LAA occur in the inverse order in the original structure to that ... |
| 9 | 3u40 | - | http://dx.plos.org/10.1371/journal.pone.0044282 | Insights into Phosphate Cooperativity and Influence of Substrate Modifications on Binding and Catalysis of Hexameric Purine Nucleoside Phosphorylases | 2012 | PO de Giuseppe, NH Martins, AN Meza? - PloS one, 2012 - dx.plos.org | ... Structural superposition of BsPNP233-Ado (magenta carbon atoms), B. cereus adenosine phosphorylase (BcAdoP)-Ado-SO 4 (green carbon atoms, PDB code 3UAW [52]) and Entamoeba histolytica PNP-Ado (cyan carbon atoms, PDB code 3U40 [55]) complexes. ... |
| 10 | 3v2i | - | http://www.mdpi.com/2079-6382/5/2/16/htm | Small Molecule Docking Supports Broad and Narrow Spectrum Potential for the Inhibition of the Novel Antibiotic Target Bacterial Pth1 | 2016 | PP Ferguson, WB Holloway, WN Setzer, H McFeeters - Antibiotics, 2016 - mdpi.com | ... were obtained from the Protein Data Bank and each structure was analyzed for ... The Pth1 setincluded eight bacterial structures: Escherichia coli (PDB 2PTH) [11 ... aeruginosa (4FYJ) [14],Francisella tularensis (3NEA) [15], Burkholderia thailandensis (3V2I) [31], Acinetobacter ... |