We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7SZV | 2021 | 0 |
| 7T24 | 2021 | 0 |
| 7T29 | 2021 | 0 |
| 7T35 | 2021 | 0 |
| 3TLF | 2011 | 0 |
| 3T5S | 2011 | 0 |
| 7TMB | 2022 | 0 |
| 7TM9 | 2022 | 0 |
| 7TM8 | 2022 | 0 |
| 7TM7 | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4twr | - | https://www.sciencedirect.com/science/article/pii/S1367593120301289 | Molecular evolution and functional divergence of UDP-hexose 4-epimerases | 2020 | S Fushinobu- Current Opinion in Chemical Biology, 2020 - Elsevier | Figure 3. Structural basis for the substrate specificity of group 1b and group 2b enzymes The rotated conformation structure was obtained using the S124A/Y149F double mutant ... Substrate-free structures of GalEs from Bacillus anthracis (BAS5114, PDB: 2C20) and Brucella abortus (PDB: 4TWR) are also available in the database |
| 2 | 6cw5 | - | https://www.sciencedirect.com/science/article/pii/S0141813019319464 | Unraveling structural insights of ribokinase from Leishmania donovani | 2019 | S Gatreddi, V Pillalamarri, D Vasudevan- International journal of, 2019 - Elsevier | Z-score 42.3; rmsd 2.1 for 307 C atoms), C. neoformans ( PDB ID: 6CW5 , Z-score 36.5; rmsd 2.7 for 290 C atoms) and adenosine kinase of A. tumefaciens ( PDB ID: 2RBC of a five amino acid stretch was observed at the two positions in the primary structure of LdRK |
| 3 | 3kjr | - | http://pubs.acs.org/doi/abs/10.1021/ci300349s | Are homology models sufficiently good for free-energy simulations? | 2012 | S Genheden - Journal of chemical information and modeling, 2012 - ACS Publications | ... factor IXa (pdb code: 1rfn(36)) with 44% sequence identity and protein C (pdb code: 1aut ... Suitable template proteins for dhfr were found by a FASTA search(38) of the protein databank. ... The results of the FASTA search are summarized in Table 1. Finally, 2bl9, 3kjr, and 2oip were ... |
| 4 | 3dms | - | http://pubs.acs.org/doi/abs/10.1021/bi300483w | Induced Fit and the Catalytic Mechanism of Isocitrate Dehydrogenase | 2012 | S Gon?alves, SP Miller, MA Carrondo, AM Dean? - Biochemistry, 2012 - ACS Publications | ... To date, there are 27 crystal structures of E. coli isocitrate dehydrogenase in the Protein Data Bank (Table 3). Burkholderia pseudomallei Strain 1710b (UNIPROT Q3JV82), 74.2% identity 3dms 71 1.65 2011 0.92 0.62 ... |
| 5 | 5vaz | - | https://www.mdpi.com/2079-6382/7/3/72 | DnaG PrimaseA Target for the Development of Novel Antibacterial Agents | 2018 | S Ilic, S Cohen, M Singh, B Tam, A Dayan, B Akabayov- Antibiotics, 2018 - mdpi.com | 3. Structural Features of DnaG Primase: Opportunities for Drug Targeting IDs: 2HAJ, 1T3W [38,41], respectively, S. aureus PDB ID: 2LZN [42], and Vibrio cholera PDB ID: 4IM9 The crystal structure of the complex between the C-terminal part of DnaG (HBD) and the N-terminal |
| 6 | 2n6t | 2n6w, 2n6x, 2n6s | https://www.sciencedirect.com/science/article/pii/S0022283617304680 | F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly | 2017 | S Jain, T Schlick- Journal of molecular biology, 2017 - Elsevier | Table 1. List of 50 RNA PDB files whose 3D structures were generated in this paper. PDB , Residues, Molecule, Structure . 2M4W, 17, HEV genome bulge, Hairpin, internal loop 2N6T , 42, CssA mRNA thermometer top, Hairpin, internal loops |
| 7 | 4fi5 | - | http://onlinelibrary.wiley.com/doi/10.1002/jcb.25765/full | Prediction of B Cell Epitopes Among Hantavirus Strains Causing Hemorragic Fever With Renal Syndrome | 2016 | S Kalaiselvan, S Sankar, M Ramamurthy - Journal of Cellular , 2016 - Wiley Online Library | ... The 3-D predicted tertiary structure of protein for the Hantaan genotype. ... Our consensus Hantaanvirus nucleoprotein-coding aa submission had 93% (Z-score: 2.19) sequence identity withN-terminal domain of Hantaan virus strain 76118 nucleoprotein (PDB ID: 4FI5) and 79 ... |
| 8 | 7so9 | - | https://dergipark.org.tr/en/pub/biotechstudies/issue/77337/1332403 | Omicron variants bind to human angiotensin-converting enzyme 2 (ACE2) much stronger due to higher number of charged-charged interactions | 2023 | S Kalyoncu- Biotech Studies - dergipark.org.tr | Three dimensional RBD domain structures of many variants used in this study were already in RCSB PBD database ( PDB IDs: 7EKF for Alpha, 7EKG for Beta, 7EKC for Delta, 7SO9 for |
| 9 | 3ijp | 4f3y | http://scripts.iucr.org/cgi-bin/paper?pu5392 | Cloning, expression, crystallization and preliminary structural studies of dihydrodipicolinate reductase from Acinetobacter baumannii | 2013 | S Kaushik, A Singh, M Sinha, P Kaur? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... 143, 617-623.] ), Bartonella henselae (BhDHDPR; PDB entry 3ijp ; Seattle Structural Genomics Center for Infectious Disease, unpublished work), Burkholderia thailandensis (BtDHDPR; PDB entry 4f3y ; Seattle Structural Genomics Center for Infectious Disease, unpublished ... |
| 10 | 3tcq | - | https://link.springer.com/article/10.1007/s00894-021-04682-8 | Targeting ebola virus VP40 protein through novel inhibitors: exploring the structural and dynamic perspectives on molecular landscapes | 2021 | S Khan, Z Fakhar, A Ahmad- Journal of Molecular Modeling, 2021 - Springer | of novel antiviral drugs. Computational methods. Structural modelling. The X-ray crystallographic structure of VP40 protein ( PDB Code: 3TCQ ) [12] was retrieved from the Protein Data Bank (www.rcsb.org). The structure was prepared |