We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TM8 | 2022 | 0 |
| 7TM7 | 2022 | 0 |
| 7TM6 | 2022 | 0 |
| 7TM5 | 2022 | 0 |
| 7TM4 | 2022 | 0 |
| 7TM0 | 2022 | 0 |
| 7TLZ | 2022 | 0 |
| 7TLY | 2022 | 0 |
| 7TJ3 | 2022 | 0 |
| 7TI7 | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3v7o | 3tcq | http://f1000research.com/articles/3-251/v1 | Characterizing alpha helical properties of Ebola viral proteins as potential targets for inhibition of alpha-helix mediated protein-protein interactions | 2014 | S Chakraborty, B Rao, B Asgeirsson… - …, 2014 - f1000research.com | ... 1EBO,2EBO,3VE0,3CSY.. 2I8B,3V7O 3FKE,3L25,4LG2,4IBK... ... A PDB database search usingthe keyword 'Ebola' generate 146 single chained proteins, which were analyzed using DefineSecondary Structure of Proteins, resulting in 758 alpha helices (ALPHA.zip). ... |
| 2 | 3md7 | 3urr, 3uw3, 3swo, 3mqd | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4257144/ | The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment | 2013 | S Chakraborty, R Venkatramani, BJ Rao… - …, 2013 - ncbi.nlm.nih.gov | ... PDB, NRes, NStructures, Specificity. ... based on the 'sequence to structure to function' paradigmis contingent upon the availability of its 3D-structure. The rapidly developing field of nextgeneration sequencing has exacerbated the bottleneck of obtaining structural data using ... |
| 3 | 3ido | 3jvi | https://www.sciencedirect.com/science/article/pii/S1570963918302012 | Vibrio cholerae LMWPTP-2 display unique surface charge and grooves around the active site: Indicative of distinctive substrate specificity and scope to design specific | 2019 | S Chatterjee, S Nath, B Ghosh, U Sen- Biochimica et Biophysica Acta (BBA, 2019 - Elsevier | The surface properties of VcLMWTP-1, although have some distinct features, resembles closely to that of E. histolytica LMWPTP ( PDB : 3IDO ) This closure at the P-loop is also evident from the structural alignment with an 'open structure ' of apo-MPtpA ( PDB : 2LUO) [41] to the |
| 4 | 2lwk | - | https://deepblue.lib.umich.edu/handle/2027.42/155127 | Using Machine Learning to Better Predict the Structure of RNA and RNA Containing Complexes | 2020 | S Chhabra - 2020 - deepblue.lib.umich.edu | 53 3.5 Top 10 RNA Structures for 2LWK predicted from sequence using CS-Fold and Rosetta structures . The statistics from Protein Data Bank ( PDB ) (http://www.rcsb.org) current understanding of the RNA structure -function relationships is limited due to |
| 5 | 4iz9 | - | http://www.sciencedirect.com/science/article/pii/S1570963913002288 | Mechanistic features of< i> Salmonella typhimurium</i> propionate kinase (TdcD): Insights from kinetic and crystallographic studies | 2013 | S Chittori, DK Simanshu, S Banerjee? - Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2013 - Elsevier | ... The recently deposited structure of Mycobacterium avium acetate kinase (PDB ID: 4IZ9; unpublished results) determined in complex with succinic acid–APC (a nucleotide analog) conjugate also shows a bound EDO at the proposed SCFA-II site ( Supplementary Fig. S1) consistent with the conserved nature of ligand binding mechanism in acetokinase family of enzymes ... |
| 6 | 3p4i | - | http://www.biomedcentral.com/1472-6807/12/24/ | Structural and mechanistic investigations on Salmonella typhimurium acetate kinase (AckA): identification of a putative ligand binding pocket at the dimeric interface | 2012 | S Chittori, H Savithri, M Murthy - BMC structural biology, 2012 - biomedcentral.com | ... Crystal structures of two archeal acetate kinases, from Thermotoga maritima (PDB:2IIR, unpublished results) and Methanosarcina thermophila[15] and one from Mycobacterium avium (PDB:3P4I, unpublished results) have been determined earlier. ... |
| 7 | 3hwk | - | http://www.sciencedirect.com/science/article/pii/S104784771000328X | Crystal structure of< i> Salmonella typhimurium</i> 2-methylcitrate synthase: Insights on domain movement and substrate specificity | 2011 | S Chittori, HS Savithri, MRN Murthy - Journal of Structural Biology, 2011 - Elsevier | ... In contrast, structural comparison of StPrpC with Mycobacterium tuberculosis GltA1 (MtGltA1; PDB: 3HWK; unpublished results) and Pyrococcus furiosus CS (PfGltA; type-I CS with shorter N-terminal) showed significant similarity in the core structure as well as in the flanking C-terminal extension... |
| 8 | 6mc0 | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4655406 | Synthesis and Kinetic Evaluation of Phosphomimetic Inhibitors Targeting Type B Ribose-5-Phosphate Isomerase from Mycobacterium Tuberculosis | 2023 | S Courtiol-Legourd, S Mariano, J Foret- Mycobacterium - papers.ssrn.com | of SoRpiA has not yet been presented, but that of the chloroplastic enzyme ( PDB code 6ZXT) [ An RpiA structure with R5P/Ru5P bound and with excellent resolution is 6MC0 (Legionella |
| 9 | 4ed9 | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13100/pdf | Identifying functionally important cispeptide containing segments in proteins and their utility in molecular function annotation | 2014 | S Das, S Ramakumar, D Pal - FEBS Journal, 2014 - Wiley Online Library | ... dots. (G), (H) and (I) depict the presence of a functionally important fragment from 1bxrA (carbamoyl phosphate synthetase) in 4ed9A (CAIB/BAIF family protein), an unknown function protein. ... |
| 10 | 4g6z | 4gri | http://www.biomedcentral.com/1471-2148/14/26/ | Evolutionary insights about bacterial GlxRS from whole genome analyses: is GluRS2 a chimera? | 2014 | S Dasgupta, G Basu - BMC evolutionary biology, 2014 - biomedcentral.com | ... The structure shown on the left corresponds to the crystal structure of T. thermophilus GluRS (pdb ID: 1j09) with residues 1-322 and 323-468 comprising the N- and the C-terminal domains, respectively. Is GluRS2 a chimera? ... |