We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3LR3 | 2010 | 0 |
| 5SDB | 2022 | 0 |
| 5SDA | 2022 | 0 |
| 5SD9 | 2022 | 0 |
| 5SD8 | 2022 | 0 |
| 2LHJ | 2011 | 0 |
| 5SD7 | 2022 | 0 |
| 5SD6 | 2022 | 0 |
| 5SD5 | 2022 | 0 |
| 5SD4 | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2kn9 | - | http://journal.iisc.ernet.in/index.php/iisc/article/view/4461 | Redox Proteins of Mycobacterium tuberculosis | 2014 | S Phulera, M Akif, AA Sardesai? - Journal of the Indian Institute of Science, 2014 - journal.iisc.ernet.in | ... The individual structures shown are (A) NrdH, pdb id: 4HS1, (B) FurB, pdb id: 2O03, (C) DipZ,pdb id: 2HYX, (D) FcoT, pdb id: 2PFC, (E) AhpD, pdb id: 1KNC, (F) Mycoredoxin, pdb id: 2LQQ, (G) Rubedoxin C with Zinc atom shown as sphere, pdb id: 2KN9, (H) TrxC, pdb id: 1LU4 ... |
| 2 | 3v7o | 5dvw | https://www.intechopen.com/books/ebola/strategies-for-the-development-of-small-m... | Strategies for the Development of Small Molecule Inhibitors of Ebola Viral Infection | 2016 | S Pleko, Podlipnik - Ebola, 2016 - intechopen.com | ... 2. Structure and action of Ebola virus. ... PDB structures: 2i8b, 3v7o, 5dvw, Target basic patcharound LYS 180 to inhibit the activation of transcription. ... PDB structures: 3vne, 3vnf, 4d9o,4m0q, 4or8, 4u2x, Inhibition of VP24 binding to karyopherin. ... |
| 3 | 3ijp | - | https://www.sciencedirect.com/science/article/pii/S0304416520302610 | Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus | 2021 | S Pote, S Kachhap, NJ Mank, L Daneshian- et Biophysica Acta (BBA, 2021 - Elsevier | This paper focuses on structural and mechanistic studies of DapB The structure for DapB has been determined from various bacterial species including Escherichia coli [14], Bartonella henselae [15 Fig. 2. (A) Tetrameric assembly of DapB from V. vulnificus ( PDB ID: 5TEN) |
| 4 | 3ijp | 4ywj, 4f3y | https://www.sciencedirect.com/science/article/pii/S0006291X18316516 | 4-Hydroxy-tetrahydrodipicolinate reductase from Neisseria gonorrhoeae structure and interactions with coenzymes and substrate analog | 2018 | S Pote, SE Pye, TE Sheahan- Biochemical and, 2018 - Elsevier | In case of NgDapB, the position of the coenzyme is modeled using structure of PaDapB ( PDB ID from Bartonella henselae, Burkholderia thailandensis, Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Thermotoga maritima ( PDB IDs: 3IJP , 4F3Y, 1ARZ, 4YWJ, 3QY9, 1VM6). |
| 5 | 3i4e | 3eol, 3p0x, 3e5b, 3oq8 | https://ubir.buffalo.edu/xmlui/handle/10477/79369 | Mechanistic Insights into the Catalytic Mechanism and Inhibition of Mycobacterium Tuberculosis Isocitrate Lyase | 2019 | S Ray - 2019 - ubir.buffalo.edu | an attractive target for drug development. 1.4.3 Structure of ICL Aspergillus nidulans [ PDB ID: 1DQU],67 M. tuberculosis [ PDB ID: 1F61, 1F8I, 1F8M, 5DQL],68- 69 Escherichia coli [ PDB ID:1IGW]70, Burkholderia pseudomallei [ PDB ID: 3I4E (paper |
| 6 | 3kw3 | - | https://gutpathogens.biomedcentral.com/articles/10.1186/s13099-018-0257-6 | Identification of a new alanine racemase in Salmonella Enteritidis and its contribution to pathogenesis | 2018 | S Ray, S Das, PK Panda- Gut pathogens, 2018 - gutpathogens.biomedcentral.com | From I-Tasser and BLAST analyses, SEN4016 (359 amino acid residues) showed significant structural identity of 91% with Chain A, Y274f Alanine Racemase from E. Coli (PDB-ID-4WR3) with an estimated score of 0.97 ± 0.05 and C-score of 1.82. Similarly, SEN3897 having a score of 0.85 ± 0.08 and C score of 1.00 showed 42% identity with Chain A, Alanine Racemase from Bartonella henselae (PDB-ID-3KW3) and SEN1235 with a C score of 1.79 and estimated score of 0.97 ± 0.05 showed 48% identity with chain A of alanine r |
| 7 | 3gka | - | http://onlinelibrary.wiley.com/doi/10.1002/cbic.201200404/abstract | Crystal Structure Determination and Mutagenesis Analysis of the Ene Reductase NCR | 2012 | S Reich, HW Hoeffken, B Rosche, BM Nestl? - ChemBioChem, 2012 - Wiley Online Library | ... Figure 1. Crystal structure of the ene reductase NCR (PDB ID: 4A3U) dis- played in cartoon representation and showing prosthetic ... in the Supporting Infor- mation), 12-oxophytodienoate reductases 1 and 3 (OPR1 and OPR3) and N-ethylmaleimidine reductase (3GKA) from the ... |
| 8 | 3rqi | - | http://pubs.acs.org/doi/full/10.1021/bi301004v | A Predicted Structure for the PixD-PixE Complex Determined by Homology Modeling, Docking Simulations, and a Mutagenesis Study | 2013 | S Ren, R Sato, K Hasegawa, H Ohta, S Masuda - Biochemistry, 2013 - ACS Publications | ... PixE Homology Modeling The amino acid sequence of PixE was obtained from the DNA DataBank of Japan (entry ... were bacterial response regulators (best 20 defined as those with the smallest E values; PDB entries 3LUF, 3N0R, 3GT7, 1QKK, 3KHT, 3RQI, 2ZQT, 2QZJ ... |
| 9 | 3u0g | - | https://link.springer.com/article/10.1007/s00436-017-5563-2 | An in silico strategy for identification of novel drug targets against Plasmodium falciparum | 2017 | S Rout, NP Patra, RK Mahapatra - Parasitology Research, 2017 - Springer | ... structure of our target protein was constructed taking multiple templates into account, namely, 1WRV (chain B), 3U0G (chain A), 1IYE (chain A), and 5E25 (chain A). The structural similarity between first template ( PDB ID 1WRV) and the modeled structure is 0.548 ... |
| 10 | 7l6s | - | https://www.nature.com/articles/s41598-025-93122-1 | Structural insights into fungal and human topoisomerase II with implications for in silico antifungal drug design | 2025 | S Sappati, K Kondaka, I Gabriel, M Baginski- Scientific Reports, 2025 - nature.com | Our analysis extended to include representative from Amoebozoa (Balamuthia mandrillaris), utilizing PDB ID 7L6S for a comprehensive comparative study. |