We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3pgz | - | http://link.springer.com/protocol/10.1007/978-1-62703-032-8_2 | Structural Diversity Based on Variability in Quaternary Association. A Case Study Involving Eubacterial and Related SSBs | 2012 | SM Arif, M Vijayan - Single-Stranded DNA Binding Proteins, 2012 - Springer | ... structures reported in the literature and/or the coordinates of which have been deposited in the Protein Data Bank (PDB) ( 17 ) form ... in the PDB, but the results are yet to be published: 1. Thermus thermophilus (TtSSB) (PDB code 2cwa). 2. Bartonella henselae (BhSSB) (3pgz). ... |
| 2 | 2khp | - | http://rave.ohiolink.edu/etdc/view?acc_num=akron1396871078 | Nuclear Magnetic Resonance Spectroscopy in the Study of Protein Complexes | 2014 | SM Bilinovich - 2014 - rave.ohiolink.edu | ... Molecular simulations and docking studies were performed using the pdb coordinates of the NMR determined structure of Brucella melitensis GRX (pdb 2KHP) (Leeper et. al 2011). Autodocking was performed using a copper(I) ion ... |
| 3 | 3md7 | - | http://pubs.acs.org/doi/abs/10.1021/bi2005398 | Structure and mechanism of PhnP, a phosphodiesterase of the carbon-phosphorus lyase pathway | 2011 | SM He, M Wathier, K Podzelinska, M Wong? - Biochemistry, 2011 - ACS Publications | ... distances in angstroms. (d) Wall-eyed stereoview of the PhnP?orthovanadate complex superimposed with B. melitensis phosphodiesterase (PDB entry 3md7) bound to guanosine 5'-monophosphate (gray sticks). PhnP residues ... |
| 4 | 3kc6 | - | http://mbio.asm.org/content/8/3/e00481-17.short | Inhibition of Avian Influenza A Virus Replication in Human Cells by Host Restriction Factor TUFM Is Correlated with Autophagy | 2017 | SM Kuo, CJ Chen, SC Chang, TJ Liu, YH Chen - mBio, 2017 - Am Soc Microbiol | ... (B) Modeling of the A/Anhui/1/2013(H7N9) virus PB2 CTD based on the A/Vietnam/1203/2004( H5N1) virus ( PDB ID 3KC6 ). ... as GTP-binding D1), and thus, the lack of association between chTUFM and PB2 627 E may be due to these in sequence and structure differences in ... |
| 5 | 3eiz | 3i4t | http://www.turkjbiochem.com/2014/435-442.Ek2.pdf | High pKa variability of cysteine residues in structural databases and the effect of H-bond contributions | 2014 | SM Marino, İ Soylu - Türk Biyokimya Dergisi [Turkish Journal of …, 2014 - turkjbiochem.com | ... High pKa variability of cysteine residues in structural ... RESULTS of ppka3 on PDB-crystal datasetprot=protein name res_num=residue number H-bond=hydrogen bond contribution to pKaprediction (pKa) Coul=electrostatics (from Coulombic interactions) contribution to pKa ... |
| 6 | 3iml | 3dms, 3hja, 3gtd, 3mbf, 3sth, 3s82, 3qbp, 3l0d, 3kx6, 4oh7, 4xfj, 4tu1 | http://www.tandfonline.com/doi/abs/10.1080/23312025.2017.1291877 | Investigation of intrinsic dynamics of enzymes involved in metabolic pathways using coarse-grained normal mode analysis | 2017 | SM Meeuwsen, AN Hodac, LM Adams - Cogent , 2017 - Taylor & Francis | ... (3IML), and M. avium (3S82) MATs together. The dynamics of 3IML are more similar to the ... 6) toassist in the open and closed conformations of the enzyme. Ornithine transcarbamylase (PDBcode: 4OH7; chains A and B of the homotrimer were ... Visualization of the structure ... |
| 7 | 7k45 | - | https://www.science.org/doi/abs/10.1126/science.abm5835 | SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies | 2022 | SM Reincke, M Yuan, HC Kornau, VM Corman- Science, 2022 - science.org | structural basis of this public broadly reactive clonotype, we determined crystal structures of We compared the structures of CS44 and CV07-287 with other published VH1-58 antibodies... Structures of VH1-58 antibodies from other studies are shown for comparison, including COVOX-253 (PDB 7BEN), S2E12 (PDB 7K45), |
| 8 | 2lxf | - | https://baylor-ir.tdl.org/handle/2104/10322 | Machine Learning-assisted Prediction of Structure and Function of Cystine-stabilized Peptides and Optimization of Expression in an E. coli System | 2018 | SMA Islam - 2018 - search.proquest.com | Each type is annotated with its name, PDB id, function and jmol estimated average 3D structural distance between disulfide bonds PBS Phosphate buffered saline PDB Protein data bank QSAR Quantitative structure activity relationship QSO Quasi-sequence-order |
| 9 | 3t7c | 3s55 | https://www.biorxiv.org/content/10.1101/2020.10.15.341941v1.abstract | Structural studies on M. tuberculosis decaprenyl phosphoryl--D-ribose epimerase-2 enzyme involved in cell wall biogenesis | 2020 | SP Gangwar, A Bandyopadhyay, AK Saxena- bioRxiv, 2020 - biorxiv.org | The MtbDprE2 structure was aligned with structures of PDB database using TM- structural alignment program of I-TASSER server, which yielded ten closest structural homologs (as coverage=97.2% [54] (vi) PDB - 3t7c , identity=13.3%, coverage=97.2% [55] (vii) PDB -1ipe |
| 10 | 3k31 | - | http://link.springer.com/article/10.1007/s12154-015-0135-3 | Prediction of protein targets of kinetin using in silico and in vitro methods: a case study on spinach seed germination mechanism | 2015 | SP Kumar, VR Parmar, YT Jasrai… - Journal of Chemical …, 2015 - Springer | ... 3 Enoyl-(acyl-carrier protein) reductase Anaplasma phagocytophilum (strain HZ) 3K31 0.25 0.39 ...similarity methods prioritized probable protein targets available from spinach PDB proteome. ...ligand similarity with caffeine, availability of yeast experi- mental structure complex with ... |