We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3gwc | 4f4a, 4fkx, 4emd | http://14.139.186.108/jspui/handle/123456789/31568 | PROTEIN-LIGAND INTERACTIONS AND STRUCTURE-BASED INHIBITOR DISCOVERY | 2018 | S Usha, S Selvaraj - 2018 - 14.139.186.108 | i) Target structure A target structure experimentally determined through X-ray crystallography or NMR spectroscopy techniques and deposited in the PDB is the ideal starting point for docking. Structural genomics has accelerated the rate at which target structures are |
| 2 | 4xi8 | 4py3, 4n67, 4lu4 | https://www.theses.fr/2017SACLS452 | Structure et fonction des toxines bactriennes domaine FIC | 2017 | S Veyron - 2017 - theses.fr | proteins from Helicobacter pylori and Neisseria meningitidis, which were determined as part of Structural Genomics Initiatives in 2006 ( PDB entries 2G03 and 2F6S, which have no associated publications). However, the structure of FIC proteins only began to be discussed |
| 3 | 3r8c | 4em8, 3te8 | http://repositories.lib.utexas.edu/handle/2152/24852 | Scoring functions for protein docking and drug design | 2014 | S Viswanath - 2014 - repositories.lib.utexas.edu | ... are also found in cell membranes, which is a hydrophobic (non-polar and water-repelling) environment. Figure 1.1 shows two complexes in the Protein Data Bank (PDB)[6, 7]. Figure 1.1 (a) is a structure of soluble complex (PDB ID 3hct) [6], which is a structure of ... |
| 4 | 3r8c | 3te8 | http://onlinelibrary.wiley.com/doi/10.1002/prot.24214/full | Improving ranking of models for protein complexes with side chain modeling and atomic potentials | 2013 | S Viswanath, DVS Ravikant? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... Target PDB ID, Receptor homolog (PDB_chain): target receptor chain, Ligand homolog (PDB_chain): target ligand chain. 2xt4, 2XT2_A:B, 2XT2_A:A. 2xty, 2XTW_A:B, 2XTW_A:A. ... 3pra, 3PRB_A:B, 3PRB_A:A. 3r8c, 3R20_A:A, 3R20_A:B. 3rd6, 3Q64_A:A, 3Q64_A:B. ... |
| 5 | 3r2v | - | http://dx.plos.org/10.1371/journal.pone.0081027.g001 | Extreme Evolutionary Conservation of Functionally Important Regions in H1N1 Influenza Proteome | 2013 | S Warren, XF Wan, G Conant, D Korkin - PloS one, 2013 - dx.plos.org | ...Table 3. Coverage and sequential similarity of protein templates. Template Template subtype Template similarity, % Residues covered 3R2V (A) H3N2 93 538-720 |
| 6 | 3qhd | 3P0Z, 3p0z | http://commons.lib.niu.edu/handle/10843/21551 | Design, synthesis, and evaluation of potential Burkholderia pseudomallei IspF inhibitors | 2019 | S Watkins - 2019 - commons.lib.niu.edu | xvi nOe Nuclear Overhauser enhancement/nuclear Overhauser effect PDB Protein Data Bank Pf Plasmodium falciparum ppm Parts per million RST Relative saturation transfer SAR Structure activity relationship SSGCID Seattle Structural Genomics Center for Infectious Disease ... It is possible the sp2 N of the imidazole is binding to the Zn2+, as seen in the crystal structures of 88 in BpIspF (3P0Z, 3QHD). |
| 7 | 3fvb | - | https://circle.ubc.ca/handle/2429/13707 | Catalysis of iron core formation in Escherichia coli bacterioferritin | 2009 | S Wong - 2009 - circle.ubc.ca | ... Another example of a small molecule occupying a ferroxidase pore was recently discovered through crystallographic analysis of BFR from Brucella melitensis (PDB ID: 3FVB). This structure revealed imidazole bound to iron at the ferroxidase site such that the imidazole is located in the ferroxidase pore directly between the ferroxidase site and the pore opening. ... |
| 8 | 3sdo | - | http://onlinelibrary.wiley.com/doi/10.1111/mmi.13363/full | Structural and biochemical characterization of EDTA monooxygenase and its physical interaction with a partner flavin reductase | 2016 | SY Jun, KM Lewis, B Youn, L Xun - Molecular , 2016 - Wiley Online Library | ... E. Open (green) and closed (cyan) form lid domains are aligned to show conservation of secondary structure of both ... Structural homologues of EmoA. ... to EmoA showed that the highest match was NTA monooxygenase (NmoA) from Burkholderia pseudomallei ( PDB : 3SDO ) with ... |
| 9 | 3krs | - | http://www.sciencedirect.com/science/article/pii/S1093326310001981 | Stability tests on known and misfolded structures with discrete and all atom molecular dynamics simulations | 2011 | S Yun, HR Guy - Journal of Molecular Graphics and Modelling, 2011 - Elsevier | ... patterns and high resolution (less than 2.0 ? resolution) were selected for this study: a human serum retinol-binding protein (RBP with PDB ID 1JYD) [24], a regulator of G-protein signaling (RGS4 with PDB ID 1EZT) [25], and triosephosphate isomerase (TIM with PDB ID 3KRS). ... |
| 10 | 5vcu | - | https://arxiv.org/abs/2102.03202 | Interpretable Neural Networks based classifiers for categorical inputs | 2021 | S Zamuner, PDL Rios- arXiv preprint arXiv:2102.03202, 2021 - arxiv.org | cartoon representation of RAS protein (green) bounded to GDP (light blue spheres) from pdb 5vcu belonging to the most relevant predicted triplets are clustered in the structure of the Note that, to better compare to plmDCA, the same architecture and hyperparameters have |