We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3eiz | 3i4t | http://www.turkjbiochem.com/2014/435-442.Ek2.pdf | High pKa variability of cysteine residues in structural databases and the effect of H-bond contributions | 2014 | SM Marino, İ Soylu - Türk Biyokimya Dergisi [Turkish Journal of …, 2014 - turkjbiochem.com | ... High pKa variability of cysteine residues in structural ... RESULTS of ppka3 on PDB-crystal datasetprot=protein name res_num=residue number H-bond=hydrogen bond contribution to pKaprediction (pKa) Coul=electrostatics (from Coulombic interactions) contribution to pKa ... |
| 2 | 3iml | 3dms, 3hja, 3gtd, 3mbf, 3sth, 3s82, 3qbp, 3l0d, 3kx6, 4oh7, 4xfj, 4tu1 | http://www.tandfonline.com/doi/abs/10.1080/23312025.2017.1291877 | Investigation of intrinsic dynamics of enzymes involved in metabolic pathways using coarse-grained normal mode analysis | 2017 | SM Meeuwsen, AN Hodac, LM Adams - Cogent , 2017 - Taylor & Francis | ... (3IML), and M. avium (3S82) MATs together. The dynamics of 3IML are more similar to the ... 6) toassist in the open and closed conformations of the enzyme. Ornithine transcarbamylase (PDBcode: 4OH7; chains A and B of the homotrimer were ... Visualization of the structure ... |
| 3 | 7k45 | - | https://www.science.org/doi/abs/10.1126/science.abm5835 | SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies | 2022 | SM Reincke, M Yuan, HC Kornau, VM Corman- Science, 2022 - science.org | structural basis of this public broadly reactive clonotype, we determined crystal structures of We compared the structures of CS44 and CV07-287 with other published VH1-58 antibodies... Structures of VH1-58 antibodies from other studies are shown for comparison, including COVOX-253 (PDB 7BEN), S2E12 (PDB 7K45), |
| 4 | 2lxf | - | https://baylor-ir.tdl.org/handle/2104/10322 | Machine Learning-assisted Prediction of Structure and Function of Cystine-stabilized Peptides and Optimization of Expression in an E. coli System | 2018 | SMA Islam - 2018 - search.proquest.com | Each type is annotated with its name, PDB id, function and jmol estimated average 3D structural distance between disulfide bonds PBS Phosphate buffered saline PDB Protein data bank QSAR Quantitative structure activity relationship QSO Quasi-sequence-order |
| 5 | 3t7c | 3s55 | https://www.biorxiv.org/content/10.1101/2020.10.15.341941v1.abstract | Structural studies on M. tuberculosis decaprenyl phosphoryl--D-ribose epimerase-2 enzyme involved in cell wall biogenesis | 2020 | SP Gangwar, A Bandyopadhyay, AK Saxena- bioRxiv, 2020 - biorxiv.org | The MtbDprE2 structure was aligned with structures of PDB database using TM- structural alignment program of I-TASSER server, which yielded ten closest structural homologs (as coverage=97.2% [54] (vi) PDB - 3t7c , identity=13.3%, coverage=97.2% [55] (vii) PDB -1ipe |
| 6 | 3k31 | - | http://link.springer.com/article/10.1007/s12154-015-0135-3 | Prediction of protein targets of kinetin using in silico and in vitro methods: a case study on spinach seed germination mechanism | 2015 | SP Kumar, VR Parmar, YT Jasrai… - Journal of Chemical …, 2015 - Springer | ... 3 Enoyl-(acyl-carrier protein) reductase Anaplasma phagocytophilum (strain HZ) 3K31 0.25 0.39 ...similarity methods prioritized probable protein targets available from spinach PDB proteome. ...ligand similarity with caffeine, availability of yeast experi- mental structure complex with ... |
| 7 | 4gie | - | https://www.mdpi.com/1422-0067/20/23/5916 | Trypanocidal Mechanism of Action and in silico Studies of p-Coumaric Acid Derivatives | 2019 | SP Lopes, YP Castillo, ML Monteiro- International journal of, 2019 - mdpi.com | In this work, twelve compounds were prepared, maintaining the (E)-3-(4-hydroxyphenyl) acrylic acid structure and modifying only the radical R for 7, C-8, C-9), being six from the aromatic ring and three from the side chain with the presence of carbonyl that confirms the structures |
| 8 | 3o2e | - | http://onlinelibrary.wiley.com/doi/10.1111/mmi.12649/full | Morphogenes bolA and mreB mediate the photoregulation of cellular morphology during complementary chromatic acclimation in Fremyella diplosiphon | 2014 | SP Singh, BL Montgomery - Molecular microbiology, 2014 - Wiley Online Library | ... Hypo, gene encodes hypothetical protein. C. Putative structure of F. diplosiphon BolA (in green) modelled on the Babesia bovis BolA structure (in red, PDB:3O2E; Abendroth et al., 2011) using two independent protein structure prediction servers, ie I-TASSER and PHYRE. ... |
| 9 | 2kwl | 2lky, 2lol | http://repositoriodigital.uns.edu.ar/handle/123456789/2489 | Aspectos estructurales y dinmicos en la relajacin de sistemas complejos, con nfasis en agua lquida, sobreenfriada y nanoconfinada | 2015 | SR Accordino - 2015 - repositoriodigital.uns.edu.ar | prctico: previene la agregacin de dos placas de grafeno. Page 9. 9 Abstract In this Thesis we studied, by means of molecular dynamic simulations, the structural and We also determined the geometrical quality of the local structure of these kinds of molecules. In |
| 10 | 2kwl | 2l4b | http://etheses.whiterose.ac.uk/id/eprint/7720 | Cloning, expression and characterisation of the starter module from indanomycin biosynthesis | 2014 | SR Derrington - 2014 - etheses.whiterose.ac.uk | Both structure calculations produced comparable structures for IdmK. The structure 137 4.5 Structure determination using NMR spectroscopy ..... 139 4.5.1 Initial analysis of the suitability of IdmK for structural studies by NMR ... Further validation was carried by comparison with known canonical acyl carrier protein folds (PDB codes: 1HY8, 1T8K, 1VKU, 2AVA, 2CGQ, 2GDW, 2KOO, 2KWL and 2L0Q) (X |