We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7ULZ | 2022 | 0 |
| 7ULH | 2022 | 0 |
| 7UGH | 2022 | 0 |
| 7UG3 | 2022 | 0 |
| 4LNE | 2013 | 0 |
| 7U6R | 2022 | 0 |
| 9ZK2 | 2025 | 0 |
| 9ZK3 | 2025 | 0 |
| 7U5Y | 2022 | 0 |
| 9ZK4 | 2025 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6bfu | - | https://www.cell.com/immunity/fulltext/S1074-7613(24)00481-3?uuid=uuid%3A254e5a1... | Isolation and escape mapping of broadly neutralizing antibodies against emerging delta-coronaviruses | 2024 | M Rexhepaj, D Asarnow, L Perruzza, YJ Park- Immunity, 2024 - cell.com | (B) Sitewise escape (y axis in line plots in A) mapped on the PDCoV RBD structure 38 ( PDB : 6BFU ). The key at the right delineates the receptor-binding loops (blue) versus core RBD ( |
| 2 | 7sof | - | https://www.cell.com/immunity/fulltext/S1074-7613(25)00178-5 | Computationally designed proteins mimic antibody immune evasion in viral evolution | 2025 | N Youssef, S Gurev, F Ghantous, KP Brock, JA Jaimes- Immunity, 2025 - cell.com | Figure 3... . The impact of K147 mutations can be seen for NTD antibody S2X303, with interactions to N65, D50, and Y31 on the antibody (PDB: 7SOF). |
| 3 | 7m53 | - | https://www.cell.com/immunity/pdf/S1074-7613(23)00079-1.pdf | Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease | 2023 | P Zhou, G Song, H Liu, M Yuan, W He, N Beutler, X Zhu- Immunity, 2023 - cell.com | Glycan molecules (sticks, white) were modeled (based on structure in PDB : structures . Key epitope residues are buried in the stem-helix bundle (green) in prefusion spike... Figure S7. Structural comparison of antibodies targeting the coronavirus spike S2 stem helix. ... CV3-25 (7NAB), B6 (7M53), and IgG22 (7S3N). S |
| 4 | 3i3r | 3nrr | https://www.cell.com/molecular-plant/abstract/S1674-2052(25)00209-6 | Structural insights into a plant-conserved DHFR-TS reveal a selective herbicide target | 2025 | J Haywood, KJ Breese, DP McDougal, C Verdonk- Molecular Plant, 2025 - cell.com | A molecular replacement model was generated based on the last common atom of PDB 3I3R and the structure solved with PHASER from CCP4100. Manual building and refinement |
| 5 | 3fvb | 3ge4 | https://www.cell.com/structure/abstract/S0969-2126(24)00538-0 | Physicochemical features of subunit interfaces and their role in self-assembly across the ferritin superfamily | 2024 | S Chakraborti, S Dey- Structure, 2024 - cell.com | Second, we obtained the structural data of those wild-type ferritin proteins from PDB . Finally, we consulted 3D-complex and QSbio resources to get the most accurate oligomeric state of |
| 6 | 5f23 | 5tw7, 5kha, 4f4h | https://www.cell.com/structure/fulltext/S0969-2126(24)00551-3 | Understanding the structural and functional diversity of ATP-PPases using protein domains and functional families in the CATH database | 2025 | J Yin, VP Waman, N Sen, M Firdaus-Raih, SD Lam- Structure, 2025 - cell.com | , 15 of them have experimentally determined structures available in the Protein DataBank ( PDB ).The remaining 20 FunFams did not have sufficient structural or sequence information to |
| 7 | 4qfh | - | https://www.cell.com/structure/fulltext/S0969-2126(25)00223-0 | CryoEM-enabled visual proteomics reveals de novo structures of oligomeric protein complexes | 2025 | Y Shen, AO Maggiolo, T Zhang, RA Warmack- Structure, 2025 - cell.com | maps by comparison to experimental structures in the Protein DataBank ( PDB ) or the now extensive database of AlphaFold-predicted protein structures . Using similar approaches, we ... independent of the proteomic results, DeepTracer and ModelAngelo models were also compared against the Protein DataBank (PDB) using the DALI server,21 and the top hits were PDB: 4QFH (T. cruzi Pgi)17 and PDB: 3NBU (E.coli Pgi),30 respectively, further confirming the identified structure as Pgi. |
| 8 | 6xdh | - | https://www.cell.com/structure/pdf/S0969-2126(22)00495-6.pdf | Room-temperature structural studies of SARS-CoV-2 protein NendoU with an X-ray free-electron laser | 2023 | RJ Jernigan, D Logeswaran, D Doppler, N Nagaratnam- Structure, 2023 - cell.com | using the crystal structure of NendoU PDB entry 6XDH as the search model (Dranow et al., unpublished results) with all solvent and ligand atoms removed. The structure was refined |
| 9 | 7lxz | 7ly3 | https://www.cell.com/trends/biochemical-sciences/fulltext/S0968-0004(23)00078-6 | Standardizing macromolecular structure files: further efforts are needed | 2023 | N D'Arminio, D Giordano, B Scafuri, A Facchiano- Trends in Biochemical, 2023 - cell.com | We present a brief overview of some of the issues we had to face in this specific case; these issues can probably be generalized to many other structures collected in the PDB database. |
| 10 | 3ol3 | - | https://www.csbj.org/cms/10.1016/j.csbj.2020.11.051/attachment/ff440127-372b-492... | Supporting Information 2D Zernike polynomial expansion: finding the protein-protein binding regions | 2021 | E Milanettia, M Miottoa, L Di Rienzob, M Montic - csbj.org | comparison of protein regions that belong to different proteins, because they 35 remove the preliminary requirement of structural alignment. Moreover, the orthogonality of the |