We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KCP | 2020 | 1 |
| 7KDN | 2020 | 1 |
| 7KDS | 2020 | 3 |
| 7KF3 | 2020 | 0 |
| 7KI4 | 2021 | 12 |
| 7KI6 | 2021 | 12 |
| 7KI8 | 2021 | 0 |
| 7KI9 | 2021 | 0 |
| 7KLI | 2020 | 1 |
| 7KM7 | 2021 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4ot8 | - | https://pubs.acs.org/doi/abs/10.1021/acschembio.0c00753 | l-Threonine Transaldolase Activity Is Enabled by a Persistent Catalytic Intermediate | 2020 | P Kumar, A Meza, JM Ellis, GA Carlson- ACS Chemical, 2020 - ACS Publications | l-Threonine transaldolases (lTTAs) are a poorly characterized class of pyridoxal-5-phosphate (PLP) dependent enzymes responsible for the biosynthesis of diverse -hydroxy amino acids... The structure was solved by molecular replacement with a distantly related serine hydroxymethyltransferase (PDB ID: 4OT8, 28.2% identity |
| 2 | 4ot8 | - | https://patents.google.com/patent/US20180265905A1/en | Chemoenzymatic synthesis of peptide beta-lactones and beta-hydroxy acids | 2018 | TA Wencewicz, JE Schaffer, MR Reck- US Patent App. 15/921,442, 2018 - Google Patents | Although the biological target of RC-Obi is unknown, bacterial transpeptidases are thought to be potential targets due to the structural similarity of RC-Obi to monocyclic -lactam antibiotics and the FIG. 14D is an X-ray crystal structure of the EntF TE domain ( PDB 3TEJ). FIG |
| 3 | 4ot8 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5958214/ | Chloroplastic serine hydroxymethyltransferase from Medicago truncatula: a structural characterization | 2018 | M Ruszkowski, B Sekula, A Ruszkowska- Frontiers in plant, 2018 - ncbi.nlm.nih.gov | It is very intriguing to see that, to our best knowledge, the conformation of the γ-hydroxyl group of PLP-Ser external aldimine is unique in comparison with nearly all other SHMT complexes in the PDB (PDB IDs: 1kkp, 1yjy, 2via, 2vmp, 2vmt, 2vmw, 2w7f, 2w7k, 4ot8), except for the alternative conformation (30% occupancy) in the E53Q mutant of Geobacillus |
| 4 | 4p8r | 4lsm | https://www.sciencedirect.com/science/article/pii/S1570963918300220 | Structural studies of glyceraldehyde-3-phosphate dehydrogenase from Naegleria gruberi, the first one from phylum Percolozoa | 2018 | ATP Machado, M Silva, J Iulek- et Biophysica Acta (BBA)-Proteins and, 2018 - Elsevier | cruzi (glicosomal) ( PDB : 4LSM) [12], Trypanosoma brucei (glicosomal) ( PDB : 4P8R ) [13], Leishmania 3PYM), Homarus americanus ( PDB : 1GPD) [46] and Escherichia coli ( PDB : 1GAD) [47 general, they are similar, with some differences in secondary structure elements; RMSD |
| 5 | 4pca | - | http://www.jbc.org/content/early/2015/05/15/jbc.M115.660829.short | Structure and Biophysical Characterization of the S-adenosylmethionine Dependent O-methyltransferase PaMTH1, a Putative Enzyme Accumulating during … | 2015 | D Chatterjee, D Kudlinzki, V Linhard, K Saxena… - Journal of Biological …, 2015 - ASBMB | ... α2 Page 7. Structure and Biophysical characterization of PaMTH1 7 loop ... Arg232, Asp235).CCoAOMT (Medicago sativa) is (PDB:1SUI) one of the closest structural homologueof PaMTH1 and also crystallizes as a dimer. The dimerization ... |
| 6 | 4pca | 4oa8, 4oa5 | http://www.sciencedirect.com/science/article/pii/S0968000417301858 | Outer Membrane Protein OmpB Methylation May Mediate Bacterial Virulence | 2017 | DCH Yang, AH Abeykoon, BE Choi, WM Ching- Trends in Biochemical, 2017 - Elsevier | ... on methylation of bacterial OMPs has uncovered novel mechanisms with respect to protein structure and catalytic ... of the 226-residue dimeric O-methyltransferase have been determined in its apo form ( PDB ID:4OA8) and in complex with AdoMet (4OA5) or AdoHcy ( 4PCA ). ... |
| 7 | 4pfz | - | https://www.sciencedirect.com/science/article/pii/S0006291X19308988 | Structural insights into a maleylpyruvate hydrolase from sphingobium sp. SYK-6, a bacterium degrading lignin-derived aryls | 2019 | H Hong, H Seo, KJ Kim- Biochemical and biophysical research, 2019 - Elsevier | delta-isomerase from Mycobacterium smegmatis strain ATCC 700084 ( PDB code 4PFZ , 41% sequence The model building and structure refinement were performed as in SsMPH Apo type Mn 2+ -pyruvate have been deposited in the Protein Data Bank with PDB codes 6JVV |
| 8 | 4pfz | 3rr6, 3qdf | https://www.sciencedirect.com/science/article/pii/S0006291X18328705 | Structural and functional analysis of a dimeric fumarylacetoacetate hydrolase (EaFAH) from psychrophilic Exiguobacterium antarcticum | 2019 | W Yoo, CW Lee, B Kim, LTHL Le, SH Park- Biochemical and, 2019 - Elsevier | overall monomer structure , a schematic diagram of the connectivity, and the residue numbering of each secondary structure are shown in ID:3RR6, Z score: 34.6), a 5-carboxymethyl-2- hydroxymuconate delta-isomerase from Mycobacterium smegmatis ( PDB ID: 4PFZ ; Z score |
| 9 | 4pq9 | - | http://www.sciencedirect.com/science/article/pii/S0959440X14000815 | A sweet new wave: structures and mechanisms of enzymes that digest polysaccharides from marine algae | 2014 | JH Hehemann, AB Boraston, M Czjzek - Current opinion in structural , 2014 - Elsevier | ... CAZy family, Protein, PDB codes. GH16, -Carrageenase (Pseudoaltermonas carragenovora), 1DYP. -Agarase ... -Porphyranase B (Zobellia galactanivorans), 3JUU. -1,3-Glucanase (Mycobacterium marinum M), 4PQ9. Laminarinase (Thermotoga ... |
| 10 | 4pq9 | - | http://www.jbc.org/content/early/2019/09/09/jbc.RA119.010619.short | A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16) | 2019 | AH Viborg, N Terrapon, V Lombard, G Michel- Journal of Biological, 2019 - ASBMB | by the presence of numerous helical elements on the core -jelly-roll fold, two in the N-terminal region and four in the C- terminal region, most of which are located on the opposite side of the structure from the active A tryptophan (W154 in PDB ID 4PQ9 (unpublished)) present |