SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 4wny - https://www.sciencedirect.com/science/article/pii/S0065216417300424 Twenty-Five Years of Investigating the Universal Stress Protein: Function, Structure, and Applications 2018 AC Vollmer, SJ Bark- Advances in applied microbiology, 2018 - Elsevier Since the initial discovery of universal stress protein A (UspA) 25 years ago, remarkable advances in molecular and biochemical technologies have revolutionized our understanding of biology. Many studies using these technologies have focused on characterization of the uspA gene and Usp-type proteins. These studies have identified t... Universal stress protein 4WNY B. pseudomallei Abendroth, Dranow, Lorimer, and Edwards (2008)
2 4wxt - https://www.sciencedirect.com/science/article/pii/S014181301830610X Inhibition of thioredoxin A1 from Corynebacterium pseudotuberculosis by polyanions and flavonoids 2018 RJ Eberle, LA Kawai, FR de Moraes, D Olivier- International journal of, 2018 - Elsevier The initial model of the Cp-TrxA1 protein was obtained by homology modeling with the M. avium Trx structure ( PDB : 4WXT ; 50% homology), in order to Structural superposition of the Cp-TrxA1 homology model and the M. avium Trx structure showed a RMSD of 0.188 (Fig
3 4wxt - http://arca.icict.fiocruz.br/handle/icict/12912 Reposicionamento de frmacos para malriaum mtodo que identifica alvos no domnio das doenas negligenciadas 2015 E Barante - 2015 - arca.icict.fiocruz.br ... the know-how of many technological areas, with focus on information, computing, and, particularlyon the construction and use of existing Internet databases such as MEDLINE, PubMed and PDB. ...The problems appear by the lack of textual structure or appropriate markup tags. ...
4 4wxt 5uth https://repositorio.unesp.br/handle/11449/152293 Mecanismo de ao e infeco por Corynebacterium pseudotuberculosis: expresso, purificao e caracterizao de protenas relacionadas ao metabolismo central 2017 LA Kawai - 2017 - repositorio.unesp.br Page 9. PBS: Tampo fosfato contendo NaCl PDB : Protein Data Bank RMN: Ressonncia Magntica Nuclear Corynebacterium pseudotuberculosis: Role of Electrostatic Forces in the Stability of the Secondary Structure , minha contribuio foi realizada na reviso final, onde
5 4x54 - https://onlinelibrary.wiley.com/doi/abs/10.1111/mmi.14437 The mycolic acid reductase Rv2509 has distinct structural motifs and is essential for growth in slowgrowing mycobacteria 2020 A Javid, C Cooper, A Singh, S Schindler- Molecular, 2020 - Wiley Online Library structures of the four highest-scoring experimental SDRs (3ASU/3ASV, 1XG5, 4X54 and 4BMV based on the SDR from Sphingobium yanoikuyae (4BMV. pdb ; GenBank ID ACB78183.1 structure elements of Rv2509 aligned to its corynebacterial homologues, the core structure of
6 4xfd - https://www.tandfonline.com/doi/abs/10.1080/07391102.2018.1552199 Validation of NAD synthase inhibitors for inhibiting the cell viability of Leishmania donovani: In silico and in vitro approach 2019 H Mandal, S Vijayakumar, S Yadav- Structure and, 2019 - Taylor & Francis Skip to Main Content
7 4xfj - https://cyberleninka.ru/article/n/spiralnye-parametry-regulyarnyh-spiraley-v-bel... HELICAL PARAMETERS OF REGULAR π-HELICES IN PROTEINS (Part 2) 2016 D. Batkhishig, B. Mijiddorj, P. Enkhbayar, 2016 - cyberleninka.ru to the DSSP program that is dedicated to identifying n-helices, which were seldom assigned by older versions of DSSP and STRIDE [7]. The secondary structure assignment methods 4XFJ A_68-74 PDB ID Chain_Po sition P (A) n Az (A)b r (A) Vc (A3) P (A) Identified Program
8 4xfj 4oh7 http://arxiv.org/abs/1601.06764 FreeSASA: An open source C library for solvent accessible surface area calculation 2016 S Mitternacht - arXiv preprint arXiv:1601.06764, 2016 - arxiv.org ... 88 PDB files were selected randomly from a set of size intervals ... PISCES specifies a specific chainin each structure, but in the following all chains were used, which resulted in the ... 4c1a, 4cj0, 4g6t,4g7x, 4gmu, 4h7u, 4kv7, 4la2, 4lix, 4n13, 4oh7, 4oxx, 4p0t, 4pj2, 4qas, 4xfj, 7odc. ...
9 4xgi - https://link.springer.com/content/pdf/10.1007/s10989-019-09886-4.pdf Homology Modeling and Molecular Docking Studies of Glutamate Dehydrogenase (GDH) from Cyanobacterium Synechocystis sp. PCC 6803 2019 O Haghighi, S Davaeifar, HS Zahiri, H Maleki- International Journal of, 2019 - Springer aLigand name in structure : NAD-507 Docking pose number Reference ligand in crystallography structure (ligand name and pdb code) NADH NADPH AKG Glutamate 1V9L 1HWYa 5GUD 5IJZ 1HWY 4XGI 6DHM 3AOG Pose 01 4.57 3.48 5.74 5.75 2.22 2.11 1.72 1.58
10 4xgi - https://pubs.rsc.org/en/content/articlehtml/2021/cy/d1cy00376c Rational engineering of Acinetobacter tandoii glutamate dehydrogenase for asymmetric synthesis of l-homoalanine through biocatalytic cascades 2021 L Wang, S Diao, Y Sun, S Jiang, Y Liu- Catalysis Science &, 2021 - pubs.rsc.org on the crystal structure of GluDH from Burkholderia thailandensis ( PDB ID: 4XGI , resolution: 2.0 ) in symbiosum ( PDB ID: 1AUP and 1BGV) and GluDH from Corynebacterium glutamicum ( PDB ID: 5IJZ amino acid may cause loss of the inherent stability of the hydration structure