We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7RA8 | 2021 | 13 |
| 7RAL | 2021 | 24 |
| 7RBX | 2021 | 4 |
| 7RCR | 2021 | 0 |
| 7RHE | 2021 | 0 |
| 7RY7 | 2022 | 7 |
| 7RZM | 2021 | 1 |
| 7RZO | 2021 | 0 |
| 7S5E | 2021 | 0 |
| 7S5M | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4whx | 3u0g | http://link.springer.com/article/10.1007/s00792-016-0816-z | First structure of archaeal branched-chain amino acid aminotransferase from Thermoproteus uzoniensis specific for l-amino acids and R-amines | 2016 | KM Boyko, TN Stekhanova, AY Nikolaeva - Extremophiles, 2016 - Springer | ... Secondary structure elements were assigned by DSSP (Touw et al. ... In the previously describedstructures of holo BCATs (PDB codes: 3U0G, 1I1K, 1WRV), the interdomain loop was found tobe ... 7) as well as in complexes of other BCATs (for example: 2EIY, 1IYE, 4WHX and 1I1L ... |
| 2 | 4whx | 3u0g | https://www.sciencedirect.com/science/article/pii/S1570963919300494 | Functional characterization of PLP fold type IV transaminase with a mixed type of activity from Haliangium ochraceum | 2019 | YS Zeifman, KM Boyko, AY Nikolaeva- et Biophysica Acta (BBA, 2019 - Elsevier | These results complement our knowledge of the catalytic diversity of transaminases and indicate the need for further research to understand the structural basis of substrate specificity in these enzymes. Abbreviations PDB entry code, 6H65. 2.8. Structure solution and refinement |
| 3 | 4whx | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25477 | The transaminase engineering database (oTAED): a navigation tool in protein sequence and structure space | 2018 | O Bu, PCF Buchholz, M Grff- Proteins: Structure, 2018 - Wiley Online Library | entry 4WHX ) and an amino lyase with activity towards 4-amino-4-deoxychorismate ( PDB entry 2Y4R) [68] as the -TA from Arthrobacter sp. ( PDB entries 5FR9 and 3WWH) which was adapted by John Wiley & Sons, Inc. PROTEINS: Structure , Function, and Bioinformatics |
| 4 | 4whx | - | https://d-nb.info/1172351694/34 | ω-Transaminases as Promising Biocatalysts for the Chiral Synthesis of β-Amino Acids | 2018 | MSO Buss - thesis | The -Transaminase Engineering Database (oTAED): a navigation tool in protein sequence and structure space o Review about the protein stability engineering in silico tool FoldX ... The largest homologous family (HFam 11) includes 90% of all Fold type IV sequences and 23 annotated structures such as a branched-chain-amino-acid TA (PDB entry 4WHX) |
| 5 | 4wi1 | 4olf | https://www.sciencedirect.com/science/article/pii/S1319016418300240 | Inverse docking based screening and identification of protein targets for Cassiarin alkaloids against Plasmodium falciparum | 2018 | A Negi, N Bhandari, BRK Shyamlal- Saudi Pharmaceutical, 2018 - Elsevier | In order, to find the active site on those structure which does not contain co-crystallise ligand, active site finder tool was used to identify the active patches Protein, PDB , Res 4WI1 , 1.65, 1-(4-fluorophenyl)-3-[4-(4-fluorophenyl)-1-methyl-3-(trifluoromethyl)-1H-pyrazol-5-yl]-urea, 0.501 |
| 6 | 4wi1 | - | https://www.preprints.org/manuscript/202010.0576 | Phytochemical, biological and computational investigations of Erythrina fusca Lour. to assess antimalarial property against Plasmodium falciparum | 2020 | SA Sazed, O Islam, SL Bliese, MRH Hossainey - 2020 - preprints.org | All these sub structures impose a chemical structure that has a resemblance only with phaseolin Phaseolin) was subjected to molecular docking study against various proteins of Pf (4plz, 4qt2,4r1e, 4r6w, 4wi1 , 4zxg, 5e16, 5jaz, 5k8s, 5znc, 6aqs, 6ee4, 6fba and 6i4b pdb id |
| 7 | 4wi1 | - | https://www.mdpi.com/1422-0067/21/11/3803 | Identification of Selective Novel Hits against Plasmodium falciparum Prolyl tRNA Synthetase Active Site and a Predicted Allosteric Site Using in silico Approaches | 2020 | DW Nyamai, Tastan Bishop- International Journal of Molecular, 2020 - mdpi.com | (B) 2D representation of (a) SANC184; (b) SANC257; (c) SANC264; (d) SANC456; (e) SANC622 (f) TCMDC-124506 ( PDB ID: 4WI1 ); (g) glyburide ( PDB ID: 5IFU SANC236 ligand was unstable during the 20 ns simulation with structure flips at 10, 30, 95, 160, and 180 ns of the |
| 8 | 4wi1 | - | https://www.sciencedirect.com/science/article/pii/S135964461730538X | Drug targeting of one or more aminoacyl-tRNA synthetase in the malarial parasite Plasmodium falciparum | 2018 | M Yogavel, R Chaturvedi, P Babbar, N Malhotra- Drug discovery today, 2018 - Elsevier | HF, yellow PDB ID: 4YDQ), glyburide (violet, PDB ID: 5IFU), TCMDC-124506 (orange, PDB ID: 4WI1 ) and modeled Takeda compound B (green, PDB ID: 5VAD Among these, benzoxaboroles target the editing site of Pf-LRS cyto effectively and the crystal structure for the |
| 9 | 4wi1 | - | http://csmres.co.uk/cs.public.upd/article-downloads/Drug-targeting-of-one-or-mor... | Drug targeting of one or more aminoacyl-tRNA synthetase in the malaria parasite Plasmodium | 2018 | Y Manickam, R Chaturvedi, P Babbar- Drug Discovery, 2018 - csmres.co.uk | site of Pf-LRScyto effectively and the crystal structure for the editing domain of enzymes with this scaffold is known different inhibitor molecules: halofuginone (HF, yellow PDB ID: 4YDQ), glyburide (violet, PDB ID: 5IFU), TCMDC-124506 (orange, PDB ID: 4WI1 ) and modeled |
| 10 | 4wkw | - | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.7b00111 | Identification of a Mycothiol-Dependent Nitroreductase from Mycobacterium tuberculosis | 2018 | A Negri, P Javidnia, R Mu, X Zhang- ACS infectious, 2018 - ACS Publications | Compared with published crystal structures of Rv2466c (PDB ID: 4NXI, 4ZIL) and the M. leprae homologue (PDB ID: 4WKW), there were significant conformational changes in one subunit of our structure |