We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8T7W | 2023 | 0 |
| 8T7Z | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6nb6 | 6nb7 | https://www.nature.com/articles/s41598-020-74715-4 | Molecular docking study of potential phytochemicals and their effects on the complex of SARS-CoV2 spike protein and human ACE2 | 2020 | A Basu, A Sarkar, U Maulik- Scientific reports, 2020 - nature.com | Every coronavirus comprises four structural proteins namely spike, envelope, nucleocapsid and membrane proteins Similarly, PDB ID 6M17 shows the presence of sodium-dependent neutral amino acid transporter B(O)AT1 in its structure |
| 2 | 6nb6 | - | https://www.biorxiv.org/content/10.1101/2020.04.03.024885v1.abstract | Rapid in silico design of antibodies targeting SARS-CoV-2 using machine learning and supercomputing | 2020 | T Desautels, A Zemla, E Lau, M Franco, D Faissol- BioRxiv, 2020 - biorxiv.org | In the absence of a known SARS-CoV-2 spike protein structure , we characterized the SARS-CoV- 2 surface glycoprotein sequence YP_009724390.1 [13 The structures of the spike proteins from SARS-CoV-1 (Protein Data Bank ( PDB ) entries: 5x58 [15], 6nb6 [10], 2dd8 [11 |
| 3 | 6nb7 | - | https://www.nature.com/articles/s41598-020-73820-8 | Hot spot profiles of SARS-CoV-2 and human ACE2 receptor protein protein interaction obtained by density functional tight binding fragment molecular orbital | 2020 | H Lim, A Baek, J Kim, MS Kim, J Liu, KY Nam- Scientific reports, 2020 - nature.com | the hot spot region, we also performed the same calculation with RBD-SARS-CoV-1/antibody complexes (five experimental structural data All experimental structures calculated in this work are summarized in Table 1. All missing side chains were filled using Prime implemented |
| 4 | 6nb7 | 6nb6 | https://arxiv.org/abs/2101.01884 | Exploring the Regulatory Function of the N-terminal Domain of SARS-CoV-2 Spike Protein Through Molecular Dynamics Simulation | 2021 | Y Li, T Wang, J Zhang, B Shao, H Gong- arXiv preprint arXiv, 2021 - arxiv.org | taking the S proteins of SARS-CoV with 2 upward RBDs ( PDB ID: 6NB6) (21) and 3 upward RBDs ( PDB ID: 6NB7 ) (21) as We also conducted a time- structure based Independent Components Analysis (tICA) (34, 35) to identify slow motions with high time autocorrelation on |
| 5 | 6nb7 | 6nb8, 6wps, 6wpt, 6ws6 | https://www.sciencedirect.com/science/article/pii/S1471490620302118 | Structural basis of SARS-CoV-2 and SARS-CoVantibody interactions | 2020 | E Gavor, YK Choong, SY Er, H Sivaraman- Trends in, 2020 - Elsevier | While the binding of COV21 to the S-glycoprotein resembles the binding of the SARS-CoV S230( PDB : 6NB7 )[73], the binding interface SARS-CoV-2-S-S309-Fab[12] complex ( PDB : 6WPS/6WPT/6WS6) and the crystal structure of SARS |
| 6 | 6nb7 | - | https://www.mdpi.com/796898 | Nicotinic cholinergic system and COVID-19: in silico identification of an interaction between SARS-CoV-2 and nicotinic receptors with potential therapeutic targeting | 2020 | K Farsalinos, E Eliopoulos, DD Leonidas- International journal of, 2020 - mdpi.com | amino acid transporter ( PDB id: 6M18), the structure of a neutralizing to ( PDB id: 6NB7 ) and the extracellular domain of the nAChR 9 subunit in complex with -bungarotoxin ( PDB id: |
| 7 | 6nb7 | 6nb4 | https://jvi.asm.org/content/early/2019/12/05/JVI.02015-19.abstract | Molecular mechanism for antibody-dependent enhancement of coronavirus entry | 2019 | Y Wan, J Shang, S Sun, W Tai, J Chen, Q Geng- Journal of, 2019 - Am Soc Microbiol | change of the spike. Future study on the high-resolution cryo-EM structure of MERS- 230 CoV Se trimer complexed with Mersmab1 will be needed to provide detailed structural 231 information for the Mersmab1-triggered conformational changes of MERS-CoV Se. SARS-CoV S-e complexed with S230 mAb (PDB ID: 6NB7). |
| 8 | 6nb8 | - | https://www.biorxiv.org/content/10.1101/2021.04.12.439478.abstract | Epitope profiling of coronavirus-binding antibodies using computational structural modelling | 2021 | SA Robinson, MIJ Raybould, C Schneider, WK Wong- bioRxiv, 2021 - biorxiv.org | Analysis of SARS-CoV-2antibody structural complexes A total of 48 antibodies and 12 nanobodies had at least one published solved X-ray crystal structure in complex to the spike receptor binding domain (RBD, see Table S1 and Table S2 for names and PDB codes), while |
| 9 | 6nb8 | - | https://saudijournals.com/media/articles/SIJB_36_143-153.pdf | Drug Targets for Corona Virus (COVID-19): A Systematic Review | 2020 | K Jayakumar - 2020 - saudijournals.com | to neutralize it, and their structures are also available ( PDB IDs: 6NB6, 6NB7, and 6NB8 .The monoclonal antibody, m396, has a competitive role for RBD binding ( PDB ID: 2DD8 However, the structure is highly variable among different members of the CoV family |
| 10 | 6nb8 | - | https://www.preprints.org/manuscript/202005.0270 | Use of Isoelectric Point for Fast Identification of Anti-SARS CoV-2 Coronavirus Proteins | 2020 | K Mallik - 2020 - preprints.org | If we follow the radial structure of the SARS CoV-2 virion, a gradual fall the in the pI values is 6NB8 (+) Human S230 antigen-binding fragment light chain 6.046 to make anti-viral drugs for SARS CoV-2. From the pI consideration, application of human Interferon- ( PDB ID 1AU1 |