We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9O66 | 2025 | 0 |
| 9O68 | 2025 | 0 |
| 9O8J | 2025 | 0 |
| 9O8N | 2025 | 0 |
| 9O90 | 2025 | 0 |
| 9O9R | 2025 | 0 |
| 9OAI | 2025 | 0 |
| 9OAK | 2025 | 0 |
| 9OAN | 2025 | 0 |
| 9OB9 | 2025 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6q09 | - | https://www.sciencedirect.com/science/article/pii/S0003986121001673 | Diversity of structures and functions of oxo-bridged non-heme diiron proteins | 2021 | MLC Nogueira, AJ Pastore, VL Davidson- Archives of Biochemistry and, 2021 - Elsevier | Archives of Biochemistry and Biophysics. Diversity of structures and functions of oxo-bridged non-heme diiron proteins. ... Fig. 3. Examples of the different combinations of amino acid residues that coordinate the irons in hemerythrin-like proteins. A. HLP from Mycobacterium kansasii with 4H/2E/1Y coordination (PDB entry 6Q09) |
| 2 | 6q09 | - | https://pubs.acs.org/doi/abs/10.1021/acsomega.0c03338 | Correlation of Conservation of Sequence and Structures of Mycobacterial Hemerythrin-like Proteins with Evolutionary Relationship and Host Pathogenicity | 2020 | Z Ma, ML Caldas Nogueira, DP Marchi-Salvador- ACS, 2020 - ACS Publications | Journal Logo. Correlation of Conservation of Sequence and Structures of Mycobacterial Hemerythrin-like Proteins with Evolutionary Relationship and Host Pathogenicity. Zhongxin Ma Zhongxin Ma. Burnett School of Biomedical |
| 3 | 6tys | - | https://www.nature.com/articles/s41594-025-01598-2 | A nanobody-based therapeutic targeting Nipah virus limits viral escape | 2025 | A Isaacs, GV Nieto, X Zhang, N Modhiran- Nature Structural &, 2025 - nature.com | Data Bank ( PDB ) 5EVM) and other antibody-bound NiV F structures ( PDB 6TYS and 7UPD) to a previously determined cryo-EM structure of apo F ( PDB 8DNG), which faces inward |
| 4 | 6tys | - | https://www.nature.com/articles/s41467-024-48601-w | A potent Henipavirus cross-neutralizing antibody reveals a dynamic fusion-triggering pattern of the G-tetramer | 2024 | P Fan, M Sun, X Zhang, H Zhang, Y Liu, Y Yao- Nature, 2024 - nature.com | Top (a) and side (b) views of the crystal structure of the NiV BD G HD /1E5 Fab complex. G HD /EB2 ( PDB ID: 2VSM) and G HD /m102.3 ( PDB ID: 6CMI) structures ... Prediction of G-F interactions based on Discovery Studio The GHD (PDB ID: 2VSM) and sF (PDB ID: 6TYS) proteins were docked using the Dock Proteins protocol (ZDOCK) in Discovery Studio 4.5. |
| 5 | 6tys | - | https://www.mdpi.com/1999-4915/12/3/342 | Structural insight into paramyxovirus and pneumovirus entry inhibition | 2020 | M Aggarwal, RK Plemper- Viruses, 2020 - mdpi.com | 19,20,21] have furthermore created a novel opportunity for structure -informed mechanistic Structural information is very limited compared to that available for the paramyxovirus attachment Consequently, crystal structures of prefusion PIV5 and NiV F ectodomains could only be |
| 6 | 6tys | 6u1t | https://www.sciencedirect.com/science/article/pii/S1476927125000143 | Molecular modelling and optimization of a high-affinity nanobody targeting the nipah virus fusion protein through in silico site-directed mutagenesis | 2025 | NMO Odchimar, ANG Dulay, FL Orosco- Computational Biology and, 2025 - Elsevier | Nipah virus (NiV) is a re-emerging zoonotic pathogen with a high mortality rate and no effective treatments, prompting the search for new antiviral strategies. While conventional antiviral ... Protein datasets of experimentally described monoclonal antibody (mAb; PDB ID: 7K14) and fragment antigen-binding antibodies (FAbs; PDB ID: 6T3F, 6U1T, 6TYS, 7UOP, 7UPA, 7UPB, 7UPD, 7UPK, and 7UP9) in complex with NiV pre-fusion protein (NiVF) and NiV pre-fusion apoprotein (PDB ID: 5EVM) were retrieved from the Prot |
| 7 | 6tys | - | https://www.nature.com/articles/s41467-023-36995-y | Structural basis for antibody recognition of vulnerable epitopes on Nipah virus F protein | 2023 | PO Byrne, BE Fisher, DR Ambrozak, EG Blade- Nature, 2023 - nature.com | The initial model for NiV F was PDB ID 6TYS . Homology models for the Fabs were generated using ABodyBuilder 66 . Initial models were docked into the cryo-EM maps using Chimera. |
| 8 | 6tys | 7ki6, 7ki4 | https://www.sciencedirect.com/science/article/pii/S016635422500141X | A monoclonal antibody targeting conserved regions of pre-fusion protein cross-neutralizes Nipah and Hendra virus variants | 2025 | T Li, H Xu, M Zhang, J Nie, B Liao, J Xie, Y Jiang, Y Liu- Antiviral Research, 2025 - Elsevier | The mAbs developed in this study and their conserved cross-neutralizing epitopes elucidated by structural analysis may contribute to the control of highly pathogenic HNV outbreaks. ... Local resolution estimation and filtering were performed using CryoSPARC. The cryo-EM structure of the NiV-F ectodomain (Protein Data Bank [PDB]: 6TYS) and crystal structure of the Fab (PDB: 7EJY) were aligned with the cryo-EM density map using UCSF Chimera |
| 9 | 6tys | - | https://www.biorxiv.org/content/10.1101/2021.07.09.451785.abstract | Study of Basic Local Alignment Search Tool (BLAST) and Multiple Sequence Alignment (Clustal-X) of Monoclonal mice/human antibodies | 2021 | IV Ferrari, P Patrizio- bioRxiv, 2021 - biorxiv.org | zone between 150-210 residues amino acids; with the exception of ID PDB 3I9G-3W9D 6TYS : (A potent cross-neutralizing antibody targeting the fusion glycoprotein inhibits Nipah virus and Antibodies all have the same basic structure consisting of two heavy and two light |
| 10 | 6tys | - | https://repositorio.ufopa.edu.br/jspui/handle/123456789/332 | Planejamento de protenas imunognicas multi-eptopo visando o desenvolvimento de uma vacina de nova gerao para a infeco do vrus Nipah | 2020 | JMP GALCIO - 2020 - repositorio.ufopa.edu.br | -defensin adjuvants were also added to the structural models to increase immunogenicity The interactions between each predicted epitope and MHC-I and MHC- II structures were also analyzed, using molecular modeling P Fosfoprotena PDB Protein Data Bank |