We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5U1P | 2016 | 0 |
| 8SBY | 2023 | 0 |
| 8SBZ | 2023 | 0 |
| 5U2A | 2016 | 0 |
| 5U2I | 2017 | 0 |
| 5U4N | 2016 | 0 |
| 5UAI | 2017 | 0 |
| 5UCR | 2017 | 0 |
| 5UFT | 2017 | 0 |
| 5UJF | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p96 | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.7b01082 | Regulatory Mechanism of Mycobacterium tuberculosis Phosphoserine Phosphatase SerB2 | 2017 | GA Grant- Biochemistry, 2017 - ACS Publications | figure Figure 1. Ribbon diagram of the structure of M. avium phosphoserine phosphatase (maPSP, Protein Data Bank entry 3p96 ) (right panel). The enzyme is a dimer with each subunit consisting of a catalytic domain (dark |
| 2 | 3ge4 | - | http://www.sciencedirect.com/science/article/pii/S0006349511009374 | Relation between molecular shape and the morphology of self-assembling aggregates: a simulation study | 2011 | R V?cha, D Frenkel - Biophysical journal, 2011 - Elsevier | Supporting Material Figure2.: A cut through the middle of a protein vesicle formed as bilayer of alpha-helices (3GE4 in Protein Database), where alpha-helices are visualised as rods and unstructured loops as wires |
| 3 | 4wxt | - | http://arca.icict.fiocruz.br/handle/icict/12912 | Reposicionamento de frmacos para malriaum mtodo que identifica alvos no domnio das doenas negligenciadas | 2015 | E Barante - 2015 - arca.icict.fiocruz.br | ... the know-how of many technological areas, with focus on information, computing, and, particularlyon the construction and use of existing Internet databases such as MEDLINE, PubMed and PDB. ...The problems appear by the lack of textual structure or appropriate markup tags. ... |
| 4 | 3i4e | 3p0x | http://link.springer.com/article/10.1007/s11274-013-1258-8 | Residues Asn214, Gln211, Glu219 and Gln221 contained in the subfamily 3 catalytic signature of the isocitrate lyase from Pseudomonas aeruginosa are involved in its catalytic and thermal properties | 2013 | J Campos-Garcia, C Diaz-Perez? - World Journal of Microbiology and Biotechnology, 2013 - Springer | ... The ICL-Pa model in the open state was built using homologous ICL from A. nidulans (PDB 1DQU), Burkholderia pseudomallei (PDB 3I4E), and E. coli (PDB 1IGW), whereas the closed state model was built using the closed model of a homologous ICL from Brucella melitensis ... |
| 5 | 3ek1 | 3i44 | http://www.sciencedirect.com/science/article/pii/S0009279715000101 | Residues that influence coenzyme preference in the aldehyde dehydrogenases | 2015 | L González-Segura, H Riveros-Rosas… - Chemico-biological …, 2015 - Elsevier | ... enzymes. 2. Methods. 2.1. Structural comparisons. Structural comparisons of the ALDHcrystal structures available in the PDB were made using PyMOL (http://www.pymol.org) and Coot [10]. 2.2. Sequence analyses. ALDH amino ... |
| 6 | 7k45 | - | https://www.nature.com/articles/S41591-021-01294-w | Resistance of SARS-CoV-2 variants to neutralization by monoclonal and serum-derived polyclonal antibodies | 2021 | RE Chen, X Zhang, JB Case, ES Winkler, Y Liu- Nature medicine, 2021 - nature.com | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused the global COVID-19 pandemic. Rapidly spreading SARS-CoV-2 variants may jeopardize newly introduced antibody and vaccine countermeasures. Here, using monoclonal antibodies (mAbs), animal ... Structures of the SARS-CoV-2 RBD in complex with a representative neutralizing antibody from (a) class 1 (S2E12, PDB: 7K45), or (b) class 2 (S309, PDB: 6WPS). |
| 7 | 3r20 | - | http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-0898-8 | Resistance related metabolic pathways for drug target identification in Mycobacterium tuberculosis | 2016 | R Cloete, E Oppon, E Murungi - BMC , 2016 - bmcbioinformatics.biomedcentral. | ... Abbreviations used: NUI- Not under investigation, PDB- Protein Data Bank, TBSGC- TB StructuralGenome ... without 3R20 used as a template while the red model consist of 3R20 used as ... EM assistedwith modelling of the protein structure and WS visually inspected the quality of ... |
| 8 | 3oxk | - | http://scripts.iucr.org/cgi-bin/paper?hv9323 | Response to Errors in Crystal structure of HINT from Helicobacter pylori | 2016 | KF Tarique, S Devi, SA Abdul Rehman - Section F: Structural , 2016 - scripts.iucr.org | ... The confusion arises again from the various PDB entries where the same protein was namedas ... branch of the HIT family (http:// www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv ... has also beenidentified to contain purine nucleoside- and nucleotide- binding proteins' (3oxk; Lorimer et al ... |
| 9 | 5vm8 | - | https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007904 | Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites | 2020 | AP Perlinska, A Stasiulewicz- PLOS Computational, 2020 - journals.plos.org | depicted with rainbow coloring (TrmD, PDB ID: 4yvg), (B) unknotted methyltransferase (Trm5, PDB ID: 2zzm On the top of this it was shown that the structure of the knotted core Different conformations of the ligand imply differences in both structural and chemical characteristics of |
| 10 | 4f3y | 4eqy, 5bq2, 5uy7 | https://www.sciencedirect.com/science/article/pii/S0882401018312464 | Reverse vaccinology and subtractive genomics-based putative vaccine targets identification for Burkholderia pseudomallei Bp1651 | 2018 | Z Nazir, SG Afridi, M Shah, S Shams, A Khan- Microbial pathogenesis, 2018 - Elsevier | 2.9. Protein 3D structures prediction. The target proteins structural information is vital for predicting immunogenic domains. The structure information of the target proteins was assessed by BLASTp analysis against Protein Data Bank ( PDB ) [42,43]. 2.10. Antigenicity prediction |