We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6N41 | 2018 | 10 |
| 5KHA | 2016 | 10 |
| 3QI6 | 2011 | 10 |
| 5UDF | 2017 | 10 |
| 5J3B | 2016 | 10 |
| 5B8I | 2015 | 10 |
| 4H51 | 2012 | 10 |
| 7N8I | 2021 | 10 |
| 3GLQ | 2009 | 9 |
| 3I44 | 2009 | 9 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3gvh | - | https://mic.microbiologyresearch.org/content/journal/micro/10.1099/mic.0.000600 | Analysis of the Mycoplasma bovis lactate dehydrogenase reveals typical enzymatic activity despite the presence of an atypical catalytic site motif | 2018 | Y Masukagami, KA Tivendale- , 2018 - mic.microbiologyresearch.org | between MBOVPG45_0326 and the other bac- terial LDHs, and 2230 % identity across the region of align- ment between MBOVPG45_0326 and the other bacterial and parasitic MDHs in the PDB protein structure database 3GVH RCSB PDB Brucella melitensis LDH |
| 2 | 5dd7 | 5cm7 | https://www.sciencedirect.com/science/article/pii/B9780444639301000119 | Analysis of the Protein Binding Sites for Thiamin and Its Derivatives to Elucidate the Molecular Mechanisms of the Noncoenzyme Action of Thiamin (Vitamin B1) | 2017 | VI Bunik, VA Aleshin- Studies in Natural Products Chemistry, 2017 - Elsevier | Elucidation of protein targets of the noncoenzyme thiamin action is advanced through structure -based identification of thiamin- or derivatives-binding protein patterns, bioinformatics analysis of their distribution among proteins and pathways, and experimental verification of the ... Active sites of the enzymes of thiamin metabolism. (A) Bacterial ThMP kinase with ThMP, nonhydrolyzable analog of ATP, and bound ions of magnesium (green) and potassium (purple) (PDB ID: 5DD7), the protein carbons in dark g |
| 3 | 6wps | - | https://www.nature.com/articles/s41598-020-71748-7 | Analysis of the SARS-CoV-2 spike protein glycan shield reveals implications for immune recognition | 2020 | OC Grant, D Montgomery, K Ito, RJ Woods- Scientific reports, 2020 - nature.com | The 3D structures show that the protein surface is extensively shielded from antibody recognition by glycans, with the notable exception of the ACE2 receptor Here we examine the structure of the SARS-CoV-2 envelope spike (S) protein that mediates host cell infection, with a. ... However, a closer examination also indicates a contraction between the 3D glycoform model and the observed binding of the neutralizing antibody S309 (PDB ID 6WPS). |
| 4 | 4f2n | 3js4 | http://www.sciencedirect.com/science/article/pii/S0141813017323541 | Anion interactions in active centers of superoxide dismutases | 2017 | VR Ribi, S Stojanovi, MV Zlatovi- International Journal of Biological, 2017 - Elsevier | ... 2rcv, 2w7w, 3ak2, 3ce1, 3dc6, 3evk, 3f7l, 3h1s, 3js4, 3lio, 3lsu, 3mds, 3pu7, 3tqj, 4br6, 4c7u, 4f2n , 4ffk, 4yet ... For example, in the crystal structure of superoxide dismutase (Fe) (sodB) from Coxiella burnetii ( PDB ID: 3tqj), there exists a anion interaction structure motif (Fig ... |
| 5 | 4i1i | 4h7p | https://www.arca.fiocruz.br/handle/icict/34553 | Anlise de aspectos estruturais em imunoinformtica utilizando candidatos vacinais contra Leishmaniose que foram selecionados usando vacinologia reversa. | 2018 | JPL Velloso - 2018 - arca.fiocruz.br | Considering the importance of protein structure in immunological interactions and in vaccine infantum, protein modeling, molecular docking, structural protein disorder. Page 11. LISTA DE QUADROS NCBI - National Center for Biotechnology Information PDB - Protein Data Bank |
| 6 | 6n41 | - | https://repositorio.unal.edu.co/handle/unal/85425 | Anlisis computacional de la hemaglutinina de los virus influenza A de linaje pandmico en Colombia | 2023 | JA suga Restrepo - repositorio.unal.edu.co | The last two chapters corresponded to the structural analysis of HA and its interaction with ), representative of its cluster, showed structural changes in the loop130 of receptor binding |
| 7 | 4g5d | - | https://www.degruyter.com/document/doi/10.1515/chem-2024-0005/html | Anti-parasitic activity and computational studies on a novel labdane diterpene from the roots of Vachellia nilotica | 2024 | NF Al-Tannak, JV Anyam, EY Santali, AI Gray- Open, 2024 - degruyter.com | structure with proteins was retrieved from a protein data bank ( PDB ) with codes: 2P7U and 4G5D agents and a structural basis for drug design) ( structures of prostaglandin F synthase |
| 8 | 3swt | - | http://uknowledge.uky.edu/pharmacy_etds/52/ | Antibiotics Targeting Tuberculosis: Biosynthesis of A-102395 and Discovery of Novel Actinomycins | 2015 | W Cai - 2015 - uknowledge.uky.edu | ... Interestingly, Cpr19 was a monomer instead of a dimer as TauD (fig 2.3.11C,PDB ID:3SWT(110)), its closest homology, suggesting that this enzyme has a distinct three dimension structure compared with other αKG:taurine dioxygenase ... |
| 9 | 3k2h | 3nrr, 3kgb | http://informahealthcare.com/doi/abs/10.1517/13543776.2011.587804 | Antifolate agents: a patent review (2006-2010) | 2011 | DL Wright, AC Anderson - Expert opinion on therapeutic patents, 2011 - informahealthcare.com | ... Also reported for the first time in 2010 by the Seattle Structural Genomics Center for Infectious Disease is the structure of DHFR-TS from Babesia bovis bound to NADP, dUMP and pemetrexed (PDB ID: 3K2H) or raltitrexed (PDB ID: 3NRR). ... |
| 10 | 4f2n | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/ardp.201800299 | Antileismanial activity, mechanism of action study and molecular docking of 1, 4bis (substituted benzalhydrazino) phthalazines | 2019 | AH Romero, N Rodrguez, H Oviedo- Archiv der, 2019 - Wiley Online Library | candidate for further pharmacokinetic and in vivo experiments as antileishmanial agent, and as a platform for further structural optimization ... Representation of molecular docking of 1,4‐bis‐(substituted benzalhydrazino) phthalazine 3b on the superoxidedismutase active sites of Leishmania major (PDB code: 4F2N) |