We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6cja | - | https://www.nature.com/articles/s41589-025-01954-9 | Terminal alkyne formation by a pyridoxal phosphate-dependent enzyme | 2025 | JB Hedges, JA Marchand, C Calv-Tusell- Nature Chemical, 2025 - nature.com | PDB 6CJA , we then superposed the structure of the second adjacent monomer from the PDB 6CJA catalytic dimer onto the structure residues present in the structure of the N terminus of |
| 2 | 4zju | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/cbdd.13686 | Ternary complex formation of AFN1252 with Acinetobacter baumannii FabI and NADH: Crystallographic and biochemical studies | 2020 | NK Rao, V Nataraj, M Ravi- Chemical Biology &, 2020 - Wiley Online Library | 6AHE) with the NAD bound AbFabI ( PDB :4JZU) (243 C atoms; PDB ; 4ZJU ),showed an rms Structural superposition revealed no major conformational changes except in The crystal structure of AbFabI in the ternary complex is similar to the reported structures of EcFabI |
| 3 | 4i1v | - | http://dx.plos.org/10.1371/journal.pone.0129600 | Tethering of Epidermal Growth Factor (EGF) to Beta Tricalcium Phosphate (βTCP) via Fusion to a High Affinity, Multimeric βTCP-Binding Peptide: Effects on … | 2015 | LM Alvarez, JJ Rivera, L Stockdale, S Saini, RT Lee… - PloS one, 2015 - dx.plos.org | ... The TT motif has been implicated in the interactions of dephospho-CoA kinases with the diphosphate group of adenosine di-phosphate (ADP) through hydrogen bonding mechanisms (PDB ID#s: 1JJV, 4I1V; [83]), suggesting a potential role for the TT motif in our binding peptide for interaction with calcium phosphate ... |
| 4 | 3eg4 | - | http://dx.plos.org/10.1371/journal.pone.0031133 | Tetrahydrodipicolinate N-Succinyltransferase and Dihydrodipicolinate Synthase from Pseudomonas aeruginosa: Structure Analysis and Gene Deletion | 2012 | R Schnell, W Oehlmann, T Sandalova, Y Braun? - PloS one, 2012 - dx.plos.org | ... In addition, the coordinates for DapD from Campylobacter jejuni (2RIJ), Enterococcus feacalis (3CJ8), Brucella melitensis (3EG4), and Yersinia ... model of the trimer of the putative tetrahydropyridine-2-carboxylate N-succinyltransferase from Campylobacter jejuni (PDB code ... |
| 5 | 3dmp | 3qbp, 3e5b, 3hm0 | https://www.sciencedirect.com/science/article/pii/S1570963920301515 | Tetramer protein complex interface residue pairs prediction with LSTM combined with graph representations | 2020 | D Sun, X Gong- Biochimica et Biophysica Acta (BBA)-Proteins and, 2020 - Elsevier | The structure diagram of LSTM neural network is shown in Fig. 3. (See Fig. 1, Fig Table 1. Dataset. DataSet, PDB ID 2H8N, 2JBR, 2NQO, 2Y32, 3DFQ, 3ESI, 3G7K, 3HM0, 3OHP, 3RD4, 3 V15, 1IZ1, 1JL2. 1KAM, 1NSW, 2GJD, 2R90, 2ZYZ, 3CDK, 3CO2, 3DMP , 3F6Z, 1BV4, 1YIF |
| 6 | 5koi | - | https://www.mdpi.com/2077-0375/13/6/568 | The Alternating Access Mechanism in Mammalian Multidrug Resistance Transporters and Their Bacterial Homologs | 2023 | SA Badiee, UH Isu, E Khodadadi, M Moradi- Membranes, 2023 - mdpi.com | By exploring the structural and functional features of PDB files for each protein by resolution, starting with higher-resolution structures and progressing to lower-resolution structures Table 1. Available PDB files for MRP1, Pgp, Sav1866, and MsbA transporter proteins. ... 5KOI [59] 3.85 Å X-ray |
| 7 | 3nfw | - | http://www.jbc.org/content/287/31/26213.short | The C-terminal Domain of 4-Hydroxyphenylacetate 3-Hydroxylase from Acinetobacter baumannii Is an Autoinhibitory Domain | 2012 | T Phongsak, J Sucharitakul, K Thotsaporn? - Journal of Biological Chemistry, 2012 - ASBMB | ... Recently, the structure of the reductase of nitrilotriacetate monooxygenase (NTA_MoB; Protein Data Bank code 3NFW) from Mycobacterium thermoresistibile has been reported (43). However, NTA_MoB (189 residues) is smaller than cB from Chelatobacter sp. (335 residues). ... |
| 8 | 4f82 | - | http://scholar.google.com/https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5022050/ | The Crystal Structure of Peroxiredoxin Asp f3 Provides Mechanistic Insight into Oxidative Stress Resistance and Virulence of Aspergillus fumigatus | 2016 | F Hillmann, K Bagramyan, M Straburger - Scientific , 2016 - ncbi.nlm.nih.gov | ... Asp f3's enzymatic activity on peroxides and structural similarity to the previously characterizedyeast-orthologue ... After failing to find a solution using the entire 4F82 model, flexible loops were ...PDB structure identifiers are 5J9B for WT Asp f3 and 5J9C for the C31S/C61S mutant. ... |
| 9 | 3emk | - | http://www.sciencedirect.com/science/article/pii/S0022283611000258 | The Crystal Structure of l-Sorbose Reductase from< i> Gluconobacter frateurii</i> Complexed with NADPH and l-Sorbose | 2011 | K Kubota, K Nagata, M Okai, K Miyazono? - Journal of molecular Biology, 2011 - Elsevier | ... Appendix A. ... Strictly conserved residues among the proteins are shown with a red background. Protein names are shown as PDB accession numbers: 2HQ1, glucose/ribitol dehydrogenase from Clostridium thermocellum; 3EMK, glucose/ribitol dehydrogenase from Brucella melitensis; ... |
| 10 | 4h3e | - | http://www.publish.csiro.au/ch/ch19346 | The Crystal Structure of the Manganese Superoxide Dismutase from Geobacillus stearothermophilus: Parker and Blake (1988) Revisited | 2020 | JJ Adams, CJ Morton, MW Parker- Australian Journal of Chemistry, 2020 - CSIRO | determined primarily by X-ray crystallography, although one SOD structure has been SODs have also been determined from Pseudomonas putida (ovalis) ( PDB ID: 1dto acidocaldarius (1b06), [ 27 ] Acanthamoeba castellanii (6j55), [ 28 ] Trypanosoma cruzi ( 4h3e ), [ 29 ] Vigna |