We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SKF | 2023 | 0 |
| 8SLD | 2023 | 0 |
| 8SLF | 2023 | 0 |
| 5VN6 | 2017 | 0 |
| 5VO7 | 2017 | 0 |
| 5VPS | 2017 | 0 |
| 8SLH | 2023 | 0 |
| 8SNG | 2023 | 0 |
| 8SNJ | 2023 | 0 |
| 8SOY | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4hvt | 3s6m, 5tnx | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.8b00777 | SPOT-peptide: Template-based prediction of peptide-binding proteins and peptide-binding sites | 2019 | T Litfin, Y Yang, Y Zhou- Journal of chemical information and, 2019 - ACS Publications | test set taken from another structure -based peptide-binding site predictor, SPRINT- peptide11 Structural genomics targets (SG4444) 11,813 proteins involved in structural genomics studies were collected from the PDB plate primarily based on domain-level structural similarity |
| 2 | 4iwh | - | https://pubs.acs.org/doi/abs/10.1021/acscentsci.8b00912 | Predicting Protein Complex Structure from Surface-Induced Dissociation Mass Spectrometry Data | 2019 | JT Seffernick, SR Harvey, VH Wysocki- ACS Central, 2019 - ACS Publications | from which data have been favorably compared to known crystal structures on many along with other bioanalytical MS and dissociation techniques, yields useful structural information, the sparse, not allowing for an unambiguous determination of the protein complex structure... Additionally, the Pnear also improved for 56/57 ideal cases (except 4IWH) when SID data were used, as shown in Figure S3A. |
| 3 | 4ix8 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/2211-5463.12715 | Biochemical and structural characterization of tyrosine aminotransferase suggests broad substrate specificity and a two state folding mechanism in Leishmania | 2019 | S Sasidharan, P Saudagar- FEBS Open Bio, 2019 - Wiley Online Library | outlier region. PROSA score of PM0081305 was -8.56 and the score remained in the region of known native structures . The template structure that was taken for modeling ( PDB ID: 4IX8 ) had a PROSA score of -8.89. The structure |
| 4 | 4k73 | - | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.8b00244 | Structural Basis for the Interaction and Processing of -Lactam Antibiotics by l,d-Transpeptidase 3 (LdtMt3) from Mycobacterium tuberculosis | 2019 | GA Libreros-Ziga, C dos Santos Silva- ACS Infectious, 2019 - ACS Publications | Structural Basis for the Interaction and Processing of -Lactam Antibiotics by l,d-Transpeptidase 3 These structures revealed a fold and catalytic diad similar to those of other Ldts Mt The Ldt Mt3 faropenem structure indicated that faropenem is degraded after Cys-246 acylation The phases were obtained by molecular replacement with Phaser53 from CCP4 suite,54 adopting the PDB entries 4K73 and 5DU727 as models for LdtMt3 and LdtMt5 structures, respectively |
| 5 | 4k9d | - | https://link.springer.com/article/10.1007/s00436-019-06225-w | Identification and characterization of glyceraldehyde 3-phosphate dehydrogenase from Fasciola gigantica | 2019 | PB Chetri, R Shukla, T Tripathi- Parasitology research, 2019 - Springer | homologs, and the structure of the GAPDH of Brugia Malayi ( PDB ID: 4K9D ) was selected After validation, the modeled structure was used for binding site prediction. The binding site was predicted using the PDB structure co-crystallized with substrate and cofactor (Frayne et al |
| 6 | 4lgv | - | https://www.mdpi.com/1422-0067/20/21/5279 | Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter | 2019 | EJ Ramrez-Nava, D Ortega-Cuellar- International journal of, 2019 - mdpi.com | Keywords: glucose 6 phosphate dehydrogenase (G6PD); bioinformatics analysis; kinetic parameters; thermal stability; three-dimensional structure Finally, using homologous 3D structures , we modeled the G6PD protein, which suggests the structural and functional |
| 7 | 4ol9 | - | https://www.sciencedirect.com/science/article/pii/S0304416519301382 | Genome-wide survey and crystallographic analysis suggests a role for both horizontal gene transfer and duplication in pantothenate biosynthesis pathways | 2019 | B Khanppnavar, R Chatterjee, GB Choudhury- et Biophysica Acta (BBA, 2019 - Elsevier | helix in the N-terminal domain (H2, residues 3341) which is typically absent in other well-characterized KPRs such as Escherichia coli (1KS9), S. aureus (4YCA), and M. tuberculosis ( 4OL9 ) (C) Cartoon representation of crystal structure of PaKPR in PDB accession, 5ZIK, 5ZIX |
| 8 | 4pfz | 3rr6, 3qdf | https://www.sciencedirect.com/science/article/pii/S0006291X18328705 | Structural and functional analysis of a dimeric fumarylacetoacetate hydrolase (EaFAH) from psychrophilic Exiguobacterium antarcticum | 2019 | W Yoo, CW Lee, B Kim, LTHL Le, SH Park- Biochemical and, 2019 - Elsevier | overall monomer structure , a schematic diagram of the connectivity, and the residue numbering of each secondary structure are shown in ID:3RR6, Z score: 34.6), a 5-carboxymethyl-2- hydroxymuconate delta-isomerase from Mycobacterium smegmatis ( PDB ID: 4PFZ ; Z score |
| 9 | 4pfz | - | https://www.sciencedirect.com/science/article/pii/S0006291X19308988 | Structural insights into a maleylpyruvate hydrolase from sphingobium sp. SYK-6, a bacterium degrading lignin-derived aryls | 2019 | H Hong, H Seo, KJ Kim- Biochemical and biophysical research, 2019 - Elsevier | delta-isomerase from Mycobacterium smegmatis strain ATCC 700084 ( PDB code 4PFZ , 41% sequence The model building and structure refinement were performed as in SsMPH Apo type Mn 2+ -pyruvate have been deposited in the Protein Data Bank with PDB codes 6JVV |
| 10 | 4qhq | - | https://link.springer.com/protocol/10.1007/978-1-4939-8736-8_12 | Navigating Among Known Structures in Protein Space | 2019 | A Narunsky, N Ben-Tal, R Kolodny- Computational Methods in Protein, 2019 - Springer | evolutionary history, with sequences that diverged beyond the point where one can identify their common ancestry; for example, the SCOP fold, CATH Architecture , and ECOD As both neighbors ( pdb 4qhq and pdb 3qwl) have a bound methionine in their PDB structure (Fig |