We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3IDO | 2009 | 10 |
| 3UW3 | 2011 | 10 |
| 3MX6 | 2010 | 10 |
| 4NPS | 2014 | 10 |
| 7KNA | 2021 | 10 |
| 3KE1 | 2009 | 10 |
| 5J3B | 2016 | 10 |
| 4NCX | 2014 | 10 |
| 3QI6 | 2011 | 10 |
| 4DZ4 | 2012 | 10 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3meq | - | http://www.springerlink.com/index/y386x24r70618558.pdf | Asymmetric reduction of diketones by two Gluconobacter oxydans oxidoreductases | 2012 | P Schweiger, H Gross, J Zeiser? - Applied Microbiology and Biotechnology, 2012 - Springer | ... identity, >70 % similarity) to other alcohol dehydrogenase with known 3-D structure, for example, to zinc-dependent alcohol dehydrogenases from Brucella suis (PDB, 3MEQ_A), Pseudomonas ... 2004), 3MEQ from B. suis, and 1RJW from G. stearthermophilus (Ceccarelli et al. ... |
| 2 | 3p10 | 3pk0, 3p32, 3p4i | http://scripts.iucr.org/cgi-bin/paper_yard?rr5017 | Significant reduction in errors associated with nonbonded contacts in protein crystal structures: automated all-atom refinement with PrimeX | 2012 | JA Bell, KL Ho, R Farid - Acta Crystallographica Section D: Biological Crystallography, 2012 - scripts.iucr.org | ... This requirement ensured that the test set deposited in the PDB was likely to be the one that was actually used in the refinement of the deposited coordinates. ... Table 1 Characteristics of ultrahigh-resolution protein structures. `Corrected', PDB code, Resolution (?), No. ... |
| 3 | 3oks | 3r4t | http://scripts.iucr.org/cgi-bin/paper?tb5051 | Structures of a gamma-aminobutyrate (GABA) transaminase from the s-triazine-degrading organism Arthrobacter aurescens TC1 in complex with PLP and with its external aldimine PLP-GABA adduct | 2012 | H Bruce, A Nguyen Tuan? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... Acta Cryst. D66, 22-25.] ) with a monomer of the transaminase from Mycobacterium smegmatis (PDB entry 3oks ; 63% amino-acid sequence identity to A1R958; Seattle Structural Genomics Center for Infectious Disease, unpublished work) as a search model. ... |
| 4 | 3ek2 | - | https://opus.uni-wuerzburg.de/opus4-wuerzburg/files/7086/Thesis_MariaHirschbeck_... | Structure-based drug design on the enoyl-ACP reductases of Yersinia pestis and Burkholderia pseudomallei | 2012 | MW Hirschbeck - opus.uni-wuerzburg.de | ... In the PDB database an apo structure of BpFabI had already been deposited (PDB code 3EK2), which was crystallized in 10% PEG 6000 and 100 mM HEPES pH 7.0. ... |
| 5 | 3krs | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24001/full | Asparagine and glutamine differ in their propensities to form specific side chain-backbone hydrogen bonded motifs in proteins | 2012 | PG Vasudev, M Banerjee? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... acts as the hydrogen bond acceptor. In the available data set of 24 TIM crystal structures, there are three examples with Asn at 119, all of which (PDB IDs:1O5X, 3KRS, 1AW1) exhibit similar motifs. Interestingly, three examples with Gln at position 119 illustrated in ... |
| 6 | 3laa | - | http://www.pnas.org/content/109/51/20907.short | Complete fiber structures of complex trimeric autotransporter adhesins conserved in enterobacteria | 2012 | MD Hartmann, I Grin? - Proceedings of the ?, 2012 - National Acad Sciences | ... was conducted with symmetry constraints; the membrane anchor was modeled by using the Hia membrane anchor domain (PDB ID code ... Comparable interaction patterns can be observed for a HIM2 in the partial Burkholderia pseudomallei TAA head structure 3LAA (17) (Fig. ... |
| 7 | 3laa | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1462-5822.2011.01711.x/full | Analysis of the BadA stalk from Bartonella henselae reveals domain‐specific and domain‐overlapping functions in the host cell infection process | 2012 | PO Kaiser, D Linke, H Schwarz, JC Leo… - Cellular …, 2012 - Wiley Online Library | ... The structures are the YadA head (PDB ID: 1PH9) of Y. enterocolitica (Nummelin et al., 2004),the BpaA head ... structural motifs matches the colouring of the schematic diagram in A. The depictedstructural motifs of 3LAA occur in the inverse order in the original structure to that ... |
| 8 | 3nfw | - | http://scripts.iucr.org/cgi-bin/paper?dp5021 | Crystallization and preliminary X-ray analysis of the reductase component of p-hydroxyphenylacetate 3-hydroxylase from Acinetobacter baumannii | 2012 | W Oonanant, J Sucharitakul, P Chaiyen? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... All of these structures share the same protein fold and lack the extra C-terminal domain found in C 1 . Recently, the structure of NTA monooxygenase component B from Mycobacterium thermoresistibile (PDB entry 3nfw ; Zhang et al., 2011 [Zhang, Y., Edwards, TE, Begley, DW ... |
| 9 | 3khw | - | http://repositorio.ufpa.br/jspui/handle/2011/6781 | Caracterização dos genes codificadores da hemaglutinina e PB2 do vírus Influenza A (H1N1) pandêmico isolado na mesorregião metropolitana de Belém | 2012 | JA FERREIRA - 2012 - repositorio.ufpa.br | ... LACEN Laboratório Central MDCK Cultura de células de rim canino (Madin Darbin Canine Kidney)Mrna Ácido ribonucléico mensageiro M631L Substituição no aminoácido 631 de uma metioninapor uma leucina OMS Organização Mundial da Saúde PDB Banco de dados de ... |
| 10 | 3dms | - | http://pubs.acs.org/doi/abs/10.1021/bi300483w | Induced Fit and the Catalytic Mechanism of Isocitrate Dehydrogenase | 2012 | S Gon?alves, SP Miller, MA Carrondo, AM Dean? - Biochemistry, 2012 - ACS Publications | ... To date, there are 27 crystal structures of E. coli isocitrate dehydrogenase in the Protein Data Bank (Table 3). Burkholderia pseudomallei Strain 1710b (UNIPROT Q3JV82), 74.2% identity 3dms 71 1.65 2011 0.92 0.62 ... |