We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3PZY | 2011 | 0 |
| 7SSQ | 2023 | 0 |
| 3P2Y | 2010 | 0 |
| 7SL5 | 2022 | 0 |
| 3OA3 | 2010 | 0 |
| 3O0K | 2010 | 0 |
| 5SCN | 2022 | 0 |
| 2MZY | 2015 | 0 |
| 3N7T | 2010 | 0 |
| 3LUZ | 2010 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6q04 | - | https://www.tandfonline.com/doi/abs/10.1080/14760584.2020.1813574 | An overview of Middle East respiratory syndrome coronavirus vaccines in preclinical studies | 2020 | N Zhang, J Shang, C Li, K Zhou, L Du- Expert Review of Vaccines, 2020 - Taylor & Francis | Structures of MERS-CoV S1-NTD and MERS-CoV S1-NTD-Neu5Ac complex are presented by ribbon model ( PDB code 6Q04 ) (A) Structure of MERS Both MERS-CoV macro domain and ADP-ribose are presented by ribbon model in green and red, separately ( PDB code 5DUS |
| 2 | 4yl5 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7093009/ | Essential Metabolic Routes as a Way to ESKAPE from Antibiotic Resistance | 2020 | ALC Barra, CD Lvia de Oliveira, LG Moro- Frontiers in Public, 2020 - ncbi.nlm.nih.gov | ID 2I5B (23)], Thermus thermophilus ( PDB ID 1UB0), A. baumannii ( PDB ID 4YL5 ), Bacteroides thetaiotaomicron tuberculosis (3O63), and for the bifunctional enzyme from Candida glabrata [ PDB IDs 3NL2 No crystal structure of an ESKAPE pathogen, ThiE, is available to date |
| 3 | 6bla | - | https://journals.plos.org/plospathogens/article?rev=2&id=10.1371/journal.ppat.10... | Recognition of a highly conserved glycoprotein B epitope by a bivalent antibody neutralizing HCMV at a post-attachment step | 2020 | X Ye, H Su, D Wrapp, DC Freed, F Li, Z Yuan- PLoS, 2020 - journals.plos.org | A 1.8 crystal structure of 325 Fab in complex with the peptide epitope revealed the molecular determinants of 325 binding to gB A molecular replacement solution was found in PHASER [67] by using a search ensemble generated from PDB IDs: 6BLA and 6DDM. |
| 4 | 4g5d | - | https://parasitesandvectors.biomedcentral.com/track/pdf/10.1186/s13071-020-3883-... | Leishmania braziliensis prostaglandin F | 2020 | EVC AlvesFerreira, TR Ferreira, P Walrad - 2020 - parasitesandvectors.biomedcentral | 1b) and the 3D structure (Fig c 3D sequence alignments of protein sequences of LmjPGF2S (PBD ID 4G5D , in grey) and human ortholog share 51.4% similarity and 34.3% identity, modelling using the Research Collabora- tory for Structural Bioinformatics (RCSB) PDB suggests |
| 5 | 5b8i | - | https://www.sciencedirect.com/science/article/pii/S1570963919300445 | Fungal Lanosterol 14-demethylase: A target for next-generation antifungal design | 2020 | BC Monk, AA Sagatova, P Hosseini, YN Ruma- et Biophysica Acta (BBA, 2020 - Elsevier | cerevisiae LDM as a template ( PDB 4LXJ), suggested that crystal structure of the catalytic domain of human CYP51 ( PDB calcineurinB in complex with FK506 ( 5B8I ); S. cerevisiae Elf2 |
| 6 | 6wpt | - | https://www.mdpi.com/866546 | The SARS-CoV-2 spike glycoprotein as a drug and vaccine target: Structural insights into its complexes with ACE2 and antibodies | 2020 | AC Papageorgiou, I Mohsin- Cells, 2020 - mdpi.com | 3. S protein Structural Details The reported structure revealed an asymmetric trimer and two conformations for one of the RBDs: up and down (Figure 3). The ACE2 binding was recently investigated in more detail, resulting in ten structures with the RBDs at different stages of ... Cryo-Electron Microscopy (Cryo-EM) structure of S309 antibody with the S glycoprotein trimer (PDB id 6wpt). The antibody chains are colored in cyan (L chain) and cornflower blue (H chain) |
| 7 | 3s6l | - | https://www.frontiersin.org/articles/10.3389/fbioe.2020.613986/pdf | Modelled structure of the cell envelope proteinase of Lactococcus lactis | 2020 | EB Hansen, P Marcatili- Frontiers in bioengineering and, 2020 - frontiersin.org | The architecture of the L. lactis CEP shares features with a large number of serine proteases to use current state of the art structure prediction algorithms to establish a structural model of software (version 2.3.3)2 was used for visualization and editing of protein structure PDB files |
| 8 | 4k9d | - | https://www.ingentaconnect.com/contentone/ben/cdth/2020/00000015/00000003/art000... | Network-Pharmacology and DFT Based Approach Towards Identification of Leads from Homalomena aromatica for Multi-Target In-Silico Screening on Entamoeba | 2020 | AK Goswami, HK Sharma, N Gogoi- Current Drug, 2020 - ingentaconnect.com | The 3D model of EhGAPDH was predicted based on multiple templates ( PDB IDs: 4O59, 4K9D , 1U8F, 4Z0H, 3V1Y) It uses robust, cross-validated Quantitative Structure Toxicity Relationship (QSTR) models for assessing various measures of toxicity. 3.6 |
| 9 | 6vxx | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7505244/ | Comparative molecular docking analysis of the SARS CoV-2 Spike glycoprotein with the human ACE-2 receptors and thrombin | 2020 | P Bhanu, NH Kumar, SH Kumar, M Relekar- , 2020 - ncbi.nlm.nih.gov | PDB ID, Ligand, Binding Pose, Binding Energy (Kcal/mol), RMSD, Receptor, Bond Length ( Figure 1a: Structural representation of 6VXX and thrombin, Figure 1b: Molecular interaction of with the 7th pose, Key - the sticks represents thrombin, the secondary structure represents the |
| 10 | 6vju | - | https://www.biorxiv.org/content/10.1101/2020.12.23.424250v1.abstract | A novel deep-sea bacterial threonine dehydratase drives cysteine desulfuration and hydrogen sulfide production | 2020 | N Ma, Y Sun, W Zhang, C Sun- bioRxiv, 2020 - biorxiv.org | of psTD with mutation of R77E (R is mutated to E; PDB 7DAR) was also solved for 156 comparison 1P5J, 6VJU (1P5J: Ser dehydratase, 6VJU : Cys synthase), which is directly opened to 193 methods. Based on the structure of psTD, its mutant and complex with PLP, we 231 |