We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3IPW | 2009 | 0 |
| 5SCX | 2022 | 0 |
| 5SCM | 2022 | 0 |
| 3GNQ | 2009 | 0 |
| 7U2Q | 2022 | 0 |
| 7U2T | 2022 | 0 |
| 4K3Z | 2013 | 0 |
| 4K6C | 2013 | 0 |
| 7U35 | 2022 | 0 |
| 7U4H | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2lwk | - | https://www.frontiersin.org/articles/10.3389/fchem.2020.00107/full?utm_source=S-... | Exploring the RNA-Recognition Mechanism Using Supervised Molecular Dynamics (SuMD) Simulations: Toward a Rational Design for Ribonucleic-Targeting | 2020 | M Bissaro, M Sturlese, S Moro- Frontiers in Chemistry, 2020 - frontiersin.org | (B) Superimposition between the experimental NMR complex ( PDB ID 2LWK , green-colored DPQ (D) RMSD of RNA phosphate atoms belonging to the backbone, computed against the PDB reference. (E) Flexibility characterizing the RNA structure during DPQ binding event |
| 2 | 6bfu | - | https://academic.oup.com/ve/article-abstract/6/1/veaa003/5734706 | Unraveling virus relationships by structure-based phylogenetic classification | 2020 | WM Ng, AJ Stelfox, TA Bowden- Virus Evolution, 2020 - academic.oup.com | Unraveling virus relationships by structure -based phylogenetic classification. Weng M Ng. Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford. ... human coronavirus NL63 (3KBH); human coronavirus 229E (6ATK); porcine deltacoronavirus, PDCoV (6BFU). All chains not comprising S1-CTD (e.g. receptor and antibody fragments) were removed prior to structural alignment |
| 3 | 6vyb | - | https://link.springer.com/article/10.1007/s11224-020-01586-w | Destabilizing the structural integrity of COVID-19 by caulerpin and its derivatives along with some antiviral drugs: An in silico approaches for a combination | 2020 | SA Ahmed, DA Abdelrheem, HR Abd El-Mageed- Structural Chemistry, 2020 - Springer | Protein preparation. The 3D crystal structure of the SARS-CoV-2 main protease Mpro ( PDB ID: 6LU7) and the cryo-electron microscopic structure of the SARS-CoV-2 spike protein Sp ( PDB ID: 6VYB ) were taken from the PDB (Protein Data Bank) site |
| 4 | 3tmg | - | http://rave.ohiolink.edu/etdc/view?acc_num=miami158754951585964 | Examination and reconstitution of the glycine betaine-dependent methanogenesis pathway from the obligate methylotrophic methanogen Methanolobus vulcani B1d | 2020 | AJ Creighbaum - 2020 - rave.ohiolink.edu | 18 Active site predictions of DhMtgB and MV8460 76 19 Predicted structural model of MV10350 compared to 78 (Hagemeier et al., 2006). No further crystal structure evidence is available to understand the mechanism of demethylation by MtsA or the enzymes responsible for |
| 5 | 5tw7 | - | https://www.biorxiv.org/content/10.1101/808618v2.full-text | Helices on interdomain interface couple catalysis in the ATPPase domain with allostery in Plasmodium falciparum GMP synthetase | 2020 | S Shivakumaraswamy, N Pandey, L Ballut, S Violot- bioRxiv, 2020 - biorxiv.org | Experimental Procedures. Sequence and structure analysis The PDB IDs of the structures of GMPS analyzed are 1GPM (Escherichia coli), 3TQI (Coxiella burnetii), 2YWB and 2YWC (Thermus thermophilus), 5TW7 (Neisseria gonorrhoeae), 2VXO (Homo sapiens), 3UOW |
| 6 | 4h3e | - | http://www.publish.csiro.au/ch/ch19346 | The Crystal Structure of the Manganese Superoxide Dismutase from Geobacillus stearothermophilus: Parker and Blake (1988) Revisited | 2020 | JJ Adams, CJ Morton, MW Parker- Australian Journal of Chemistry, 2020 - CSIRO | determined primarily by X-ray crystallography, although one SOD structure has been SODs have also been determined from Pseudomonas putida (ovalis) ( PDB ID: 1dto acidocaldarius (1b06), [ 27 ] Acanthamoeba castellanii (6j55), [ 28 ] Trypanosoma cruzi ( 4h3e ), [ 29 ] Vigna |
| 7 | 5trw | 5tqi | https://www.sciencedirect.com/science/article/pii/S0141813019377980 | Structural attributes and substrate specificity of pyridoxal kinase from Leishmania donovani | 2020 | S Are, S Gatreddi, P Jakkula, IA Qureshi- International Journal of Biological, 2020 - Elsevier | with ADP pyridoxamine, ADP pyridoxine, ADP ginkgotoxin and ADP alone have also been determined to provide structural insights of The initial phases of LdPdxK-ADP structure were obtained using the coordinates of sheep brain pyridoxal kinase ( PDB code 1LHP; 38 |
| 8 | 4y0e | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/ange.201914896 | Pathway from Nalkylglycine to alkylisonitrile catalyzed by iron (II) and 2oxoglutarate dependent oxygenases | 2020 | WC Chang, TY Chen, J Chen, Y Tang- Angewandte, 2020 - Wiley Online Library | Table S4). Dali search suggested the structure of ScoE resembles those of other Fe/2OG-enzymes such as CarC ( PDB ID: 4oj8) and a putative dioxygenases ( PDB ID: 4y0e ), with Z-score of 20.0 and 26.7, respectively. In the |
| 9 | 4xgi | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7326016/ | Structural studies of glutamate dehydrogenase (isoform 1) from Arabidopsis thaliana, an important enzyme at the branch-point between carbon and nitrogen | 2020 | M Grzechowiak, J Sliwiak, M Jaskolski- Frontiers in Plant, 2020 - ncbi.nlm.nih.gov | vertebrate, and fungal GDHs have been deposited in the Protein Data Bank ( PDB ) In the present study, we report the crystal structure of AtGDH1 in apo form, as To provide background for functional and structural discussions, we investigated the evolutionary divergence of the |
| 10 | 3khp | - | https://link.springer.com/content/pdf/10.1186/s12866-020-01763-1.pdf | Proteinprotein interaction of Rv0148 with Htdy and its predicted role towards drug resistance in Mycobacterium tuberculosis | 2020 | G Bhargavi, S Hassan, S Balaji, SP Tripathy- BMC microbiology, 2020 - Springer | Rv0148 and Htdy interaction analysis The crystallographically determined structure of Htdy ( PDB code 3KHP ) and the predicted model structure of Rv0148 were used for docking using the ClusPro server b Ramachandran plot for the predicted model structure of Rv0148 |