We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7U56 | 2022 | 0 |
| 7U5F | 2022 | 0 |
| 7U5Q | 2022 | 0 |
| 7U5Y | 2022 | 0 |
| 7U6R | 2022 | 0 |
| 4LNE | 2013 | 0 |
| 7UG3 | 2022 | 0 |
| 7UGH | 2022 | 0 |
| 7ULH | 2022 | 0 |
| 7ULZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3tjr | - | https://www.biorxiv.org/content/10.1101/2020.07.15.204123v2.abstract | On the Emergence of P-Loop NTPase and Rossmann Enzymes from a Beta-Alpha-Beta Ancestral Fragment | 2020 | LM Longo, J Jablonska, P Vyas, R Kolodny, N Ben-Tal- bioRxiv, 2020 - biorxiv.org | between Rossmanns and P-loops, ideally with respect to not only structure but also sequence 2003.1.1.417; PDB : 1k2w) and short chain dehydrogenase (F-Group 2003.1.1.332; PDB : 3tjr ) showing the highest overlap (Figure 4) |
| 2 | 4f82 | 4f4a | http://search.proquest.com/openview/afda5488243a36c7973c912298122359/1?pq-origsi... | Investigating Imatinib-Resistant Mutations in Abl Kinase | 2020 | A Lyczek - 2020 - search.proquest.com | 10 *(52& Illustration of important structural features of imatini< |
| 3 | 6nb6 | 6nb7 | https://www.nature.com/articles/s41598-020-74715-4 | Molecular docking study of potential phytochemicals and their effects on the complex of SARS-CoV2 spike protein and human ACE2 | 2020 | A Basu, A Sarkar, U Maulik- Scientific reports, 2020 - nature.com | Every coronavirus comprises four structural proteins namely spike, envelope, nucleocapsid and membrane proteins Similarly, PDB ID 6M17 shows the presence of sodium-dependent neutral amino acid transporter B(O)AT1 in its structure |
| 4 | 2mu0 | 2kok | https://pubs.acs.org/doi/abs/10.1021/acs.biochem.0c00651 | Isofunctional Clustering and Conformational Analysis of the Arsenate Reductase Superfamily Reveals Nine Distinct Clusters | 2020 | MR Rosen, JB Leuthaeuser, CA Parish, JS Fetrow- Biochemistry, 2020 - ACS Publications | Arsenate reductase (ArsC) is a superfamily of enzymes that reduce arsenate. Due to active site similarities, some ArsC can function as low-molecular weight protein tyrosine phosphatases (LMW-PTPs).... We performed MD simulations to better understand the conformational behavior of each of the nine classes of proteins identified by autoMISST. Starting structures for these simulations were obtained from the following data available in the RCSB PDB:34 group 3AAA, 2KOK (chain A); group 4AA, 2MU0 (chain A); gro |
| 5 | 6od8 | - | https://www.sciencedirect.com/science/article/pii/S0141813020347772 | Leishmanial aspartyl-tRNA synthetase: Biochemical, biophysical and structural insights | 2020 | GC Panigrahi, R Qureshi, P Jakkula, KA Kumar- International Journal of, 2020 - Elsevier | Furthermore, CD and intrinsic tryptophan fluorescence measurements showed the changes in structural conformation at varying pH, denaturants and ligands. The modelled LdaspRS structure presented all the specific characteristics of class II aaRSs, ... The three-dimensional structure of LdaspRS was predicted by homology modelling using Modeller 9.16 [22] with Leishmania major Friedlin aspartyl tRNA synthetase (PDB ID: 6OD8) as a template. |
| 6 | 3mmt | - | https://chemrxiv.org/ndownloader/files/24733793 | The Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis | 2020 | M Sharma, P Abayakoon, Y Jin, R Epa, JP Lingford - 2020 - chemrxiv.org | Figure S15. Closed conformations of PfkB, TPK and SF kinases indicate close structural rela- tionship EcYihVADPMgSF structure reveals KRN sulfonate recognition triad in YihV A, FBPA from Bartonella henselae forms homotetramers ( 3MMT . pdb ),{, 2011 #8494} FBPA from |
| 7 | 6ok4 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3975 | Chlamydia trachomatis glyceraldehyde 3phosphate dehydrogenase: Enzyme kinetics, highresolution crystal structure, and plasminogen binding | 2020 | N Schormann, J Campos, R Motamed- Protein, 2020 - Wiley Online Library | Chlamydia trachomatis glyceraldehyde 3phosphate dehydrogenase: Enzyme kinetics, highresolution crystal structure , and plasminogen binding. Norbert Schormann We describe here the highresolution crystal structure of the holo enzyme refined at 1.5 resolution |
| 8 | 3s6d | - | https://www.biorxiv.org/content/10.1101/2020.12.04.412312v2.abstract | Leptospira interrogans triosephosphate isomerase: exploring the structural determinants of stability, high reaction rate and specificity. | 2020 | V Pareek, V Dhayabarn, H Balaram, PR Krishnaswamy- bioRxiv, 2020 - biorxiv.org | Contrary to our observation for the LiTIM structure , the backbone -CO of Trp11 has previously been observed in other TIMs (eg Page 15. 15 rare example of Glu at position 94 (LiTIM numbering) is in Coccidiodes immitis ( PDB ID: 3S6D ; Figures S2 and S5B) |
| 9 | 6ona | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/tbed.13944 | Evolution of H9N2 avian influenza viruses in Iran, 20172019 | 2020 | M Bashashati, DH Chung- Transboundary and, 2020 - Wiley Online Library | (http://www.cbs.dtu.dk/services/NetNGlyc/) and GlyProt server (http://www.glycosciences.de/ modeling/). The HA structure was modelled using the H9 HA template ( PDB accession number, 6ONA ) in the SWISS-MODEL server (https://swissmodel.expasy.org/) and |
| 10 | 3ixc | - | https://www.frontiersin.org/articles/10.3389/fmicb.2020.00742/full?report=reader | Crystal structure and active site engineering of a halophilic -carbonic anhydrase | 2020 | M Vogler, R Karan, D Renn, A Vancea- Frontiers in, 2020 - frontiersin.org | (C) The surface potential of CA_D compared to mesophilic -CA homologs (Escherichia coli, 3tio; Salmonella enterica, 3r3r; Anaplasma phagocytophilum, 3ixc ; Bacillus cereus, 1xhd (A) CA_D (crystal structure ), (B) Cam (crystal structure ) from M. thermophila ( PDB ID: 1qrg |