We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5SD0 | 2022 | 0 |
| 3L0D | 2009 | 0 |
| 2LHJ | 2011 | 0 |
| 5SCZ | 2022 | 0 |
| 5SCM | 2022 | 0 |
| 5SCY | 2022 | 0 |
| 3JS9 | 2009 | 0 |
| 5SCP | 2022 | 0 |
| 3IPW | 2009 | 0 |
| 5SCO | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6vxx | 6vyb | https://www.ncbi.nlm.nih.gov/pmc/articles/pmc7337389/ | Glycans on the SARS-CoV-2 spike control the receptor binding domain conformation | 2020 | R Henderson, RJ Edwards, K Mansouri, K Janowska- bioRxiv, 2020 - ncbi.nlm.nih.gov | this map yielding a structure aligning to the unmutated 2P structure ( PDB ID 6VXX ) with a one RBD 'up' state structure fit to this map to its unmutated counterpart ( PDB ID 6VYB N234A mutation (Figure 3E and andF).F). However, the limited resolution of this structure limits close |
| 2 | 4h3e | - | http://www.publish.csiro.au/ch/ch19346 | The Crystal Structure of the Manganese Superoxide Dismutase from Geobacillus stearothermophilus: Parker and Blake (1988) Revisited | 2020 | JJ Adams, CJ Morton, MW Parker- Australian Journal of Chemistry, 2020 - CSIRO | determined primarily by X-ray crystallography, although one SOD structure has been SODs have also been determined from Pseudomonas putida (ovalis) ( PDB ID: 1dto acidocaldarius (1b06), [ 27 ] Acanthamoeba castellanii (6j55), [ 28 ] Trypanosoma cruzi ( 4h3e ), [ 29 ] Vigna |
| 3 | 6nb6 | 6nb7, 6nb8, 6q05 | https://www.ncbi.nlm.nih.gov/pmc/articles/pmc7074424/ | Drug targets for corona virus: A systematic review | 2020 | M Prajapat, P Sarma, N Shekhar, P Avti- Indian journal of, 2020 - ncbi.nlm.nih.gov | inhibition property.[39] The structure (protein data bank [ PDB ] ID 5ZUV and 5ZVM) shows a stable 6-helix bundle structure with S230 antibody Fab fragment binds to the SARS-CoV complex to neutralize it, and their structures are also available ( PDB IDs: 6NB6 , 6NB7, and |
| 4 | 3t7c | 3s55 | https://www.biorxiv.org/content/10.1101/2020.10.15.341941v1.abstract | Structural studies on M. tuberculosis decaprenyl phosphoryl--D-ribose epimerase-2 enzyme involved in cell wall biogenesis | 2020 | SP Gangwar, A Bandyopadhyay, AK Saxena- bioRxiv, 2020 - biorxiv.org | The MtbDprE2 structure was aligned with structures of PDB database using TM- structural alignment program of I-TASSER server, which yielded ten closest structural homologs (as coverage=97.2% [54] (vi) PDB - 3t7c , identity=13.3%, coverage=97.2% [55] (vii) PDB -1ipe |
| 5 | 3mmt | - | https://chemrxiv.org/ndownloader/files/24733793 | The Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis | 2020 | M Sharma, P Abayakoon, Y Jin, R Epa, JP Lingford - 2020 - chemrxiv.org | Figure S15. Closed conformations of PfkB, TPK and SF kinases indicate close structural rela- tionship EcYihVADPMgSF structure reveals KRN sulfonate recognition triad in YihV A, FBPA from Bartonella henselae forms homotetramers ( 3MMT . pdb ),{, 2011 #8494} FBPA from |
| 6 | 6q04 | - | https://science.sciencemag.org/content/370/6520/1089.abstract | Structural analysis of full-length SARS-CoV-2 spike protein from an advanced vaccine candidate | 2020 | S Bangaru, G Ozorowski, HL Turner- , 2020 - science.sciencemag.org | Report. Structural analysis of full-length SARS-CoV-2 spike protein from an advanced vaccine candidate 1Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA |
| 7 | 5v6d | 4dut, 6ay1, 4ek2, 4hr2 | https://www.mdpi.com/1422-0067/21/18/6779 | Structure, Folding and Stability of Nucleoside Diphosphate Kinases | 2020 | F Georgescauld, Y Song, A Dautant- International Journal of Molecular, 2020 - mdpi.com | So far, 162 structures from 30 different species have been deposited within the Protein Data Bank ( PDB ) which fall to tetramer type II and two are isolated dimers [23,24,25] (Table 1). The structure of most tetramers was recently solved by a structural genomics approach yet ... 5v6d Neisseria gonorrhoeae in complex with citrate (1.85 Å) Abendroth, J.; Mayclin, S.J.; Lorimer, D.D.; Edwards, T.E. |
| 8 | 6uk3 | 5v96, 6aph, 3d64, 3n58, 3glq | https://www.mdpi.com/2218-273X/10/12/1682 | S-adenosyl-l-homocysteine Hydrolase: A Structural Perspective on the Enzyme with Two Rossmann-Fold Domains | 2020 | K Brzezinski- Biomolecules, 2020 - mdpi.com | major [3G1U, unpublished], Cryptosporidium parvum [5HM8 unpublished], Acanthamoeba castellanii [ 6UK3 , unpublished], Naegleria Crystal structures of SAHases were acquired from PDB cofactor-binding domains was performed based on secondary structure assignments in |
| 9 | 5vir | 4fry, 4ymi | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.0c00735 | Structural and Molecular Dynamics of Mycobacterium tuberculosis Malic Enzyme, a Potential Anti-TB Drug Target | 2020 | KH Burley, BJ Cuthbert, P Basu- ACS Infectious, 2020 - ACS Publications | \ Interestingly, the three top-scoring NADP+ molecules are found in structures of Mtb nicotinamide-mononucleotide adenylyltransferase (NadD) (PDB ID: 4S1O) and Mycobacterium abscessus NadD (PDB ID: 4YMI and 5VIR). These results |
| 10 | 5vnx | 3qhx | https://www.sciencedirect.com/science/article/pii/S0022283620306033 | Crystallographic Snapshots of the Dunathan and Quinonoid Intermediates provide Insights into the Reaction Mechanism of Group II Decarboxylases | 2020 | SC Gayathri, N Manoj- Journal of Molecular Biology, 2020 - Elsevier | Previously, we reported the biochemical characterization and the crystal structure of an archaeal type-I transferase superfamily and displays the characteristic three-domain architecture of the PLP aldehyde bound form (apoMjDCPLP ALD , non-covalently bound, PDB ID: 3F9T |