We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5vvw | - | https://www.sciencedirect.com/science/article/pii/S0024320520312194 | Comparative modeling and dynamic simulation of UDP-N-acetylmuramoyl-alanine ligase (MurC) from Mycobacterium tuberculosis through virtual screening | 2020 | MA Isa- Life Sciences, 2020 - Elsevier | The reference sequence (query sequence), searched against PDB and six proteins (1GQQ, 4HV4, 1P31, 2F00, 5VVW and 1J6U of its entire amino acids were in the most favorable region(Table 1). The G-factor of both the model of MurC, minimized model structure and the |
| 2 | 5vwm | - | https://www.sciencedirect.com/science/article/pii/S0968089620306568 | N-Hydroxyformamide LpxC inhibitors, their in vivo efficacy in a mouse Escherichia coli infection model, and their safety in a rat hemodynamic assay | 2020 | T Furuya, AB Shapiro, J Comita-Prevoir- Bioorganic & Medicinal, 2020 - Elsevier | Fig. 2. Key interactions in the LpxC enzyme binding pocket observed in P. aeruginosa LpxCCHIR-090 (3) co-crystal structure ( PDB code: 5VWM ). We first implemented a docking model using the ICM-Pro software (Molsoft) based on the available co-crystal structures of P |
| 3 | 3u0g | - | https://link.springer.com/article/10.1007/s00253-020-10369-6 | Structural insight into the substrate specificity of PLP fold type IV transaminases | 2020 | EY Bezsudnova, VO Popov, KM Boyko- Applied Microbiology and, 2020 - Springer | Due to the rigid structure of the -sheet, the residues constituting it form a peculiar mold for substrate binding. The interdomain loop (light blue) and -turn (black) of the large domain of the first subunit confine the P-pocket from the other sides PDB ID:*. X-strand 3U0G |
| 4 | 5td3 | 5vxt, 5umh | https://www.frontiersin.org/articles/10.3389/fmicb.2020.01100/full | Characterization of a Novel Functional Trimeric Catechol 1, 2-Dioxygenase From a Pseudomonas stutzeri Isolated From the Gulf of Mexico | 2020 | J Rodrguez-Salazar, AG Almeida-Juarez- Frontiers in, 2020 - frontiersin.org | substrates in its catalytic site (Vetting and Ohlendorf, 2000; Earhart et al., 2005; Micalella et al., 2011, PDB entries: 2XSR 5UMH, 5TD3 , and 5VXT) model of PSC12DO was elaborated using the CPHmodels 3.2 Server based on the C12DO P. arvilla structure (PDBid: 2AZQ ... Burkholderia vietnamiensis, 48% (PDBid:5TD3); and Burkholderia ambifaria, 43% (PDBid:5VXT). The most variable regions are located in residues 1–29 |
| 5 | 4ed9 | - | http://broncoscholar.library.cpp.edu/handle/10211.3/215321 | Overexpression and Purification of the Protein BaiK for Structural Characterization by X-Ray Crystallography | 2020 | S Khuu - 2020 - broncoscholar.library.cpp.edu | Initially , BaiK was overexpressed to produce large quantity of protein for use in structural and structure being very similar to histidine while also being added at a high concentration. 11 formation of more ordered crystal structures . The effective concentration of the protein |
| 6 | 3krs | - | https://www.mdpi.com/2076-2607/8/1/40 | Gene Cloning, Recombinant Expression, Characterization, and Molecular Modeling of the Glycolytic Enzyme Triosephosphate Isomerase from Fusarium oxysporum | 2020 | B Hernndez-Ochoa, S Gmez-Manzo- Microorganisms, 2020 - mdpi.com | Triosephosphate isomerase (TPI) is a glycolysis enzyme, which catalyzes the reversible isomerization between dihydroxyactetone-3-phosphate (DHAP) and glyceraldehyde-3-phosphate (GAP). In pathogenic organisms, TPI is essential to obtain the energy used to survive and infect ... Figure 2. Bioinformatic analysis of FoxTPI with other triosephosphate isomerases (TPIs)... , 3KRS (Cryptosporidium Parvum), 5UPR (Toxoplasma gondii), |
| 7 | 6amz | - | https://www.sciencedirect.com/science/article/pii/S002251932030028X | Identification of potential therapeutic targets in Neisseria gonorrhoeae by an in-silico approach | 2020 | P Tanwer, SRR Kolora, A Babbar, D Saluja- Journal of Theoretical, 2020 - Elsevier | The obtained protein. pdb file was overlapped with the homologous protein whose crystal structure ( 6AMZ from Acinetobacter baumannii) was obtained from RCSB database (Berman et al., 2000). Both protein structures were overlapped using Pymol (Alexander et al., 2011) to |
| 8 | 6an0 | - | https://www.mdpi.com/2076-2607/8/5/732 | The Role of Gene Elongation in the Evolution of Histidine Biosynthetic Genes | 2020 | S Del Duca, S Chioccioli, A Vassallo, LM Castronovo- Microorganisms, 2020 - mdpi.com | 6AN0 Elizabethkingia anophelis Amino acid sequences from HisA/HisF, IGPD, and HDH, available in the PDB , were downloaded from UniProt [29], aligned using BioEdit [30] through the ClustalW tool [31], and the conservation of the secondary structure organization was |
| 9 | 3gbz | - | https://pubs.rsc.org/en/content/articlehtml/2020/me/c9me00097f | How evolution designs functional free energy landscapes of proteins? A case study on emergence of regulation in CDK family kinases. | 2020 | Z Shamsi, D Shukla- Molecular Systems Design & Engineering, 2020 - pubs.rsc.org | structures of CDK2 ( PDB ID: 5OSM, 6Q3F, 6Q4A, 6Q4B, 6Q4C, 6Q4D, 6Q4K), G/CDK ( PDB ID: 3GBZ ), and pfpk5 structures are native-like based on GA341 score and have comparable DOPE score with CDK2 native structure as shown in PDB ID for CMGI for native CDK2 score |
| 10 | 6bfu | - | https://journals.asm.org/doi/abs/10.1128/jvi.01301-20 | Cryo-electron microscopy structure of the swine acute diarrhea syndrome coronavirus spike glycoprotein provides insights into evolution of unique coronavirus spike | 2020 | H Guan, Y Wang, V Perulija, AFUH Saeed- Journal of, 2020 - Am Soc Microbiol | HCoV-NL63 ( PDB accession number 5SZS); (C) S trimer of the deltacoronavirus PdCoV ( PDB accession number 6BFU ); (D) S bronchitis virus (IBV) ( PDB accession number 6CV0); (E) S trimer of the betacoronavirus SARS-CoV ( PDB accession number 5X58 (F) Structure of the |