We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8FBQ | 2023 | 0 |
| 8FXB | 2023 | 0 |
| 8FXC | 2023 | 0 |
| 8GHK | 2024 | 0 |
| 8S6M | 2024 | 0 |
| 8S9G | 2023 | 0 |
| 8TA0 | 2024 | 0 |
| 8TA1 | 2024 | 0 |
| 8TBR | 2024 | 0 |
| 8TVB | 2024 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4f2n | - | https://www.mdpi.com/2223-7747/9/8/983 | Three Alkaloids from an Apocynaceae Species, Aspidosperma spruceanum as Antileishmaniasis Agents by In Silico Demo-case Studies | 2020 | D Morales-Jadn, J Blanco-Salas, T Ruiz-Tllez- Plants, 2020 - mdpi.com | of this method can provide insights into the druggable targetome contained in the structural proteome criteria were chosen (vg to be a starting structure , to have a similar structure of a drawn using Marvin Sketch 19.15 converting the format of some structures into pdb files using ... Table A2. Enzymes crystal structures available in PDB server. 4f2n.1.A target SOD |
| 2 | 3tmg | - | http://rave.ohiolink.edu/etdc/view?acc_num=miami158754951585964 | Examination and reconstitution of the glycine betaine-dependent methanogenesis pathway from the obligate methylotrophic methanogen Methanolobus vulcani B1d | 2020 | AJ Creighbaum - 2020 - rave.ohiolink.edu | 18 Active site predictions of DhMtgB and MV8460 76 19 Predicted structural model of MV10350 compared to 78 (Hagemeier et al., 2006). No further crystal structure evidence is available to understand the mechanism of demethylation by MtsA or the enzymes responsible for |
| 3 | 5ucm | - | https://www.sciencedirect.com/science/article/pii/S002192581750441X | Human trans-editing enzyme displays tRNA acceptor-stem specificity and relaxed amino acid selectivity | 2020 | O Vargas-Rodriguez, M Bakhtina, D McGowan- Journal of Biological, 2020 - Elsevier | Corrections to the resulting alignment were made based on the structural alignment of Cc ProXp-ala (Protein Data Bank entry 5VXB) and Pa ProRS (Protein Data Bank entry 5UCM). |
| 4 | 4wny | - | https://www.biorxiv.org/content/10.1101/2020.10.03.324806v1.abstract | A Universal Stress Protein upregulated by hypoxia may contribute to chronic lung colonisation and intramacrophage survival in cystic fibrosis | 2020 | A O'Connor, R Berisio, M Lucey, K Schaffer, S McClean- bioRxiv, 2020 - biorxiv.org | abilities. 253 To identify structural determinants responsible for the different behaviours of USP76 and 254 USP92, in particular their different abilities to bind to epithelial cells, we used homology 255 modelling and analysed resulting structures the best template was the BupsA stress protein from Burkholderia pseudomallei (PDB code 563 4wny, seqid 69.2%). |
| 5 | 3oc6 | - | https://chemrxiv.org/ndownloader/files/23930861 | BioMetAll: Identifying Metal-Binding Sites in Proteins from Backbone Preorganization | 2020 | JE Snchez-Aparicio, L Tiessler-Sala - 2020 - chemrxiv.org | Only 6- phosphogluconolactonase from mycobacterium smegmatis (which structure is accessible at the PDB with the code 3oc6 ) with an of BioMetAll in an artificial metalloenzyme framework, we started by looking for the His-His- Asp/Glu motif in the 6-PGLac structure |
| 6 | 4g6c | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744477/ | New Putative Antimicrobial Candidates: In silico Design of Fish-Derived Antibacterial Peptide-Motifs | 2020 | H Okella, JJ Georrge, S Ochwo, C Ndekezi- Frontiers in, 2020 - ncbi.nlm.nih.gov | a global docking procedure in four folds, motif-based prediction based on peptide conformation, rigid-body docking, scoring based on structural clustering; and final structure minimization. ... The affinity of peptide-motifs A15_B and A15_E was highest within chains of the target proteins (PDB ID 1rrv, 4g6c, and 4oj8). |
| 7 | 3mmt | - | https://chemrxiv.org/ndownloader/files/24733793 | The Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis | 2020 | M Sharma, P Abayakoon, Y Jin, R Epa, JP Lingford - 2020 - chemrxiv.org | Figure S15. Closed conformations of PfkB, TPK and SF kinases indicate close structural rela- tionship EcYihVADPMgSF structure reveals KRN sulfonate recognition triad in YihV A, FBPA from Bartonella henselae forms homotetramers ( 3MMT . pdb ),{, 2011 #8494} FBPA from |
| 8 | 5b8i | - | https://www.sciencedirect.com/science/article/pii/S1570963919300445 | Fungal Lanosterol 14-demethylase: A target for next-generation antifungal design | 2020 | BC Monk, AA Sagatova, P Hosseini, YN Ruma- et Biophysica Acta (BBA, 2020 - Elsevier | cerevisiae LDM as a template ( PDB 4LXJ), suggested that crystal structure of the catalytic domain of human CYP51 ( PDB calcineurinB in complex with FK506 ( 5B8I ); S. cerevisiae Elf2 |
| 9 | 6wpt | - | https://www.nature.com/articles/s41467-020-18058-8 | A cross-reactive human IgA monoclonal antibody blocks SARS-CoV-2 spike-ACE2 interaction | 2020 | M Ejemel, Q Li, S Hou, ZA Schiller, JA Tree- Nature, 2020 - nature.com | COVID-19 caused by SARS-CoV-2 has become a global pandemic requiring the development of interventions for the prevention or treatment to curtail mortality and morbidity. No vaccine to boost mucosal immunity, or as a therapeutic, has yet been developed to SARS-CoV-2. ... However, this predicted epitope of MAb362 is different from the other recently reported MAb complexes to the SARS-CoV-2-RBD (Fig. 3c and Supplementary Fig. 5), including: CR302217 (PDB: 6W41); S30916 (PDB: 6WPT); REGN10933 and REGN1098725; |
| 10 | 5unb | - | https://www.sciencedirect.com/science/article/pii/S0091674919316021/pdf?md5=51ff... | Janus kinase inhibition for autoinflammation in patients with DNASE2 deficiency | 2020 | Y Hong, M Capitani, C Murphy, S Pandey- Journal of Allergy and, 2020 - Elsevier | Structural modelling Structural models and figures were prepared using the ICM software package (Molsoft). A homology model for human DNase II was prepared using the existing structure from Burkholderia thailandensis ( PDB 5unb ) as the model template |