We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7ly3 | 7ral | https://www.cell.com/cell-reports/pdf/S2211-1247(22)00798-7.pdf | Cryo-EM structures of SARS-CoV-2 Omicron BA. 2 spike | 2022 | V Stalls, J Lindenberger, SMC Gobeil, R Henderson- Cell Reports, 2022 - cell.com | The structures used in this analysis included PDB IDs 7KE8 (G6141), 7KE6 (G6142), 7KE7 (G6143), 7KE4 (G6144), 7LWS (Alpha), 7LYL (Beta), 8CSA (TM), 7LWL (Mk1), 7LWI (Mk2), |
| 2 | 7ly0 | - | https://www.nature.com/articles/s41564-022-01092-1 | Differential neutralizing antibody responses elicited by CoronaVac and BNT162b2 against SARS-CoV-2 Lambda in Chile | 2022 | ML Acevedo, A Gaete-Argel, L Alonso-Palomares- Nature, 2022 - nature.com | determined crystal structures ( PDB : 7BNN, PDB : 7BWJ, PDB : 7LY0 ). Structural alignments c) Same as a) for antibody S2M28 solved by CryoEM (PDBid: 7LY0 ), which recognizes the |
| 3 | 5elo | - | https://www.nature.com/articles/s41467-022-33736-5 | Lysyl-tRNA synthetase, a target for urgently needed M. tuberculosis drugs | 2022 | SR Green, SH Davis, S Damerow, CA Engelhart- Nature, 2022 - nature.com | structure of M. tuberculosis LysRS was solved through molecular replacement using the structure of Cryptosporidium parvum LysRS ( PDB : 5elo ) 22 and the structure was refined using |
| 4 | 7lxy | - | https://www.nature.com/articles/s41467-022-32262-8 | SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization | 2022 | D Mannar, JW Saville, Z Sun, X Zhu, MM Marti- Nature, 2022 - nature.com | structure , ACE2 affinity, and evasion of antibodies afforded by previously emerged variant spikes, providing a general structural coordinates ( PDB code 7MJG, 7MJM, 7MJN, 7LXY , 7K43 |
| 5 | 3m1x | 3i3f, 3m4s, 3mqw | https://scripts.iucr.org/cgi-bin/paper?ft5116 | Crystal structure of a hypothetical protein from Giardia lamblia | 2022 | DK Beard, S Bristol, K Cosby, A Davis- Section F: Structural, 2022 - scripts.iucr.org | One of these proteins is a putative endonuclease from Entamoeba histolytica ( PDB entries 3mqw, 3m1x and 3m4s; 36% sequence identity and 56% coverage; Seattle Structural |
| 6 | 2lwk | - | https://portal.ichb.pl/wp-content/uploads/2023/02/Doktorat_AleksandraJarmoowicz.... | Small molecules interacting with Influenza virus RNA and SARS-CoV-2 RNA as potential inhibitors of replication | 2022 | A Jarmoowicz - portal.ichb.pl | M121 structural motif of segment 5 (+)RNA secondary structure was investigated by importance of the conserved secondary structure of mentioned structural motif and suggest that it |
| 7 | 7k45 | - | https://www.science.org/doi/abs/10.1126/science.abm5835 | SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies | 2022 | SM Reincke, M Yuan, HC Kornau, VM Corman- Science, 2022 - science.org | structural basis of this public broadly reactive clonotype, we determined crystal structures of We compared the structures of CS44 and CV07-287 with other published VH1-58 antibodies... Structures of VH1-58 antibodies from other studies are shown for comparison, including COVOX-253 (PDB 7BEN), S2E12 (PDB 7K45), |
| 8 | 5vxt | - | https://www.sciencedirect.com/science/article/pii/S0304389422001923 | Construction of Biomimetic Nanozyme With High Laccase-and Catecholase-like Activity for Oxidation and Detection of Phenolic Compounds | 2022 | J Wang, R Huang, W Qi, R Su, Z He- Journal of Hazardous Materials, 2022 - Elsevier | Herein, inspired by the similar structure of active site in laccase and catecholase, a novel We expect this finding is beneficial to better understanding the structure -activity relationship ... Scheme 1. Schematic illustration of the synthesis of the I-Cu nanozyme with laccase- and catecholase-like activity by mimicking their catalytic center. (PDB code is 1KYA and 5VXT). |
| 9 | 5vwm | 6ote, 6pth, 6cfp | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4633401 | Unveiling Success Determinants for Amb-Assisted Phase Expansion of Fusion Proteins in Arp/Warp | 2023 | MC Cardona-Echavarra, C Santilln - papers.ssrn.com | In this study, the PDB was mined to obtain an up-to-date list of the FP crystallographic 103 structures of the most used protein tags: maltose binding protein (MBP), thioredoxin (TRX), |
| 10 | 3k9g | 3s6l, 3oib, 3km3, 3njb, 3o2e | https://scripts.iucr.org/cgi-bin/paper?nz5010 | Multivariate estimation of substructure amplitudes for a single-wavelength anomalous diffraction experiment | 2023 | NS Pannu, P Skubk- Acta Crystallographica Section D: Structural, 2023 - scripts.iucr.org | The model-building performance is judged by the fraction of the PDB -deposited model backbone that is `correctly built'. A residue is considered to be correctly built if its C position is at |