SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 3lnc - https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4631842 Zno-S. Cerevisiae: An Effective Growth Promoter of Astragalus Memeranaceus and Nano-Antibacterial Agent Against Fusarium Oxysporum by Improving Trifolirhizin 2023 Y Su, W Yang, R Wang, H Zhang, J Meng- Available at SSRN - papers.ssrn.com 3D crystal structures were imported into , PDB ID: 3o7q was selected for MFS transporter, guanylate kinase based 607 on PDB ID: 3lnc , sedoheptulose-bisphosphatase based on PDB
2 3k9g 3s6l, 3oib, 3km3, 3njb, 3o2e https://scripts.iucr.org/cgi-bin/paper?nz5010 Multivariate estimation of substructure amplitudes for a single-wavelength anomalous diffraction experiment 2023 NS Pannu, P Skubk- Acta Crystallographica Section D: Structural, 2023 - scripts.iucr.org The model-building performance is judged by the fraction of the PDB -deposited model backbone that is `correctly built'. A residue is considered to be correctly built if its C position is at
3 7lxw 7lxx, 7ly0, 7soa, 7sof, 7ly3 https://www.cell.com/cell-reports/pdf/S2211-1247(22)01868-X.pdf Structural analysis of receptor engagement and antigenic drift within the BA. 2 spike protein 2023 JW Saville, D Mannar, X Zhu, AM Berezuk, S Cholak- Cell Reports, 2023 - cell.com Cryo-EM structures of the BA.2 S-human ACE2 complex and of the extensively mutated BA.2 Our analysis reveals structural mechanisms underlying the antigenic drift in the rapidly
4 6tys 7ki6, 7ki4 https://www.nature.com/articles/s41467-023-39278-8 Structure and antigenicity of divergent Henipavirus fusion glycoproteins 2023 A Isaacs, YS Low, KL Macauslane, J Seitanidou- Nature, 2023 - nature.com -EM structures from this work also display clear fusion peptide loop densities, which were only previously seen in structures determined by X-ray crystallography for NiV F ( PDB 5EVM &
5 5u9p - https://www.sciencedirect.com/science/article/pii/S0022286023007160 Synthesis, crystallographic and spectroscopic investigation, chemical reactivity, hyperpolarizabilities and in silico molecular docking study of (Z)-2N-(tert 2023 FZ Boudjenane, F Triki-Baara, N Boukabcha- of Molecular Structure, 2023 - Elsevier In Table 9, binding affinities for various poses in the 5U9P inhibitor of the investigated ligand between the molecule and the residues of the proteins 5U9P , 4HP8, 4Z9X, 1VL8, 4IBO and
6 3r2v - https://www.sciencedirect.com/science/article/pii/B9780323857307000266 Antimicrobial (viral, bacterial, fungal, and parasitic) mechanisms of action of boron-containing compounds 2023 ED Farfn-Garca, A Kilic, J Garca-Machorro- Viral, Parasitic, Bacterial, 2023 - Elsevier in a complex on the polymerase basic protein 2 of the influenza virus ( PDB code: 3R2V ). in the Protein Data Bank ( PDB ). The obtained crystal structures allow the analysis of BCC with
7 7so9 - https://dergipark.org.tr/en/pub/biotechstudies/issue/77337/1332403 Omicron variants bind to human angiotensin-converting enzyme 2 (ACE2) much stronger due to higher number of charged-charged interactions 2023 S Kalyoncu- Biotech Studies - dergipark.org.tr Three dimensional RBD domain structures of many variants used in this study were already in RCSB PBD database ( PDB IDs: 7EKF for Alpha, 7EKG for Beta, 7EKC for Delta, 7SO9 for
8 6mc0 - https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4655406 Synthesis and Kinetic Evaluation of Phosphomimetic Inhibitors Targeting Type B Ribose-5-Phosphate Isomerase from Mycobacterium Tuberculosis 2023 S Courtiol-Legourd, S Mariano, J Foret- Mycobacterium - papers.ssrn.com of SoRpiA has not yet been presented, but that of the chloroplastic enzyme ( PDB code 6ZXT) [ An RpiA structure with R5P/Ru5P bound and with excellent resolution is 6MC0 (Legionella
9 6b8s - https://www.sciencedirect.com/science/article/pii/S0005272822004182 Unveiling the membrane bound dihydroorotate: Quinone oxidoreductase from Staphylococcus aureus 2023 FM Sousa, P Pires, A Barreto, PN Refojo- et Biophysica Acta (BBA, 2023 - Elsevier Because of the low solubility of this molecule, we used a structural menaquinone analogue lacking the aliphatic carbon tail, dimethyl-naphthoquinone (DMN). The enzyme showed a ...
10 6n41 - https://repositorio.unal.edu.co/handle/unal/85425 Anlisis computacional de la hemaglutinina de los virus influenza A de linaje pandmico en Colombia 2023 JA suga Restrepo - repositorio.unal.edu.co The last two chapters corresponded to the structural analysis of HA and its interaction with ), representative of its cluster, showed structural changes in the loop130 of receptor binding