We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5koi | - | https://www.mdpi.com/2077-0375/13/6/568 | The Alternating Access Mechanism in Mammalian Multidrug Resistance Transporters and Their Bacterial Homologs | 2023 | SA Badiee, UH Isu, E Khodadadi, M Moradi- Membranes, 2023 - mdpi.com | By exploring the structural and functional features of PDB files for each protein by resolution, starting with higher-resolution structures and progressing to lower-resolution structures Table 1. Available PDB files for MRP1, Pgp, Sav1866, and MsbA transporter proteins. ... 5KOI [59] 3.85 Å X-ray |
| 2 | 3p96 | - | https://www.nature.com/articles/s42003-023-05402-z | A morpheein equilibrium regulates catalysis in phosphoserine phosphatase SerB2 from Mycobacterium tuberculosis | 2023 | E Pierson, F De Pol, M Fillet, J Wouters- Communications Biology, 2023 - nature.com | structure 14 ( PDB : 3P96 ). The residues are exposed to solvent and not engaged in intramolecular interactions. The difference in numbering comes from the fact that MaSerB bears two |
| 3 | 4zju | - | https://www.sciencedirect.com/science/article/pii/S1476927123000208 | Computational docking investigation of phytocompounds from bergamot essential oil against Serratia marcescens protease and FabI: Alternative pharmacological | 2023 | KB Lokhande, A Tiwari, S Gaikwad, S Kore- Biology and Chemistry, 2023 - Elsevier | Also, the binding cavity information of the FabI model was taken from the template structure PDB ID: 4ZJU complexes with NAD crystal ligand and the binding cavity of the FabI model |
| 4 | 3p96 | - | https://www.sciencedirect.com/science/article/pii/S0223523422008376 | Targeting the phosphoserine phosphatase MtSerB2 for tuberculosis drug discovery, an hybrid knowledge based/fragment based approach | 2023 | M Haufroid, AN Volkov, J Wouters- European Journal of Medicinal, 2023 - Elsevier | model (Fc) solved at 2.05 resolution ( PDB : 3P96 ) [24] and with experimental reflection data (Fo). In the present paper, previously acquired knowledge on the structural and inhibition |
| 5 | 6tys | - | https://www.nature.com/articles/s41467-024-48601-w | A potent Henipavirus cross-neutralizing antibody reveals a dynamic fusion-triggering pattern of the G-tetramer | 2024 | P Fan, M Sun, X Zhang, H Zhang, Y Liu, Y Yao- Nature, 2024 - nature.com | Top (a) and side (b) views of the crystal structure of the NiV BD G HD /1E5 Fab complex. G HD /EB2 ( PDB ID: 2VSM) and G HD /m102.3 ( PDB ID: 6CMI) structures ... Prediction of G-F interactions based on Discovery Studio The GHD (PDB ID: 2VSM) and sF (PDB ID: 6TYS) proteins were docked using the Dock Proteins protocol (ZDOCK) in Discovery Studio 4.5. |
| 6 | 4o5m | 3u0i | https://zaguan.unizar.es/record/135847 | Flavoenzymes in Microbial Systems: Analysis of Structure-Function Relationships | 2024 | MI Minjarez Saenz, MM Medina Trullenque - zaguan.unizar.es | Esta Tesis Doctoral se plante con objeto de mejorar nuestra comprensin de los mecanismos de accin especficos de especie en sistemas dependientes de flavoenzimas como |
| 7 | 7ki4 | 7ki6 | https://link.springer.com/article/10.1007/s11030-024-10932-7 | From antibiotic to antiviral: computational screening reveals a multi-targeting antibiotic from Streptomyces spp. against Nipah virus fusion proteins | 2024 | NMO Odchimar, MAB Macalalad, FL Orosco- Molecular Diversity, 2024 - Springer | , a crystal structure was used ( PDB ID: 5EVM). structure , homology modeling was performed using SWISSMODEL with the following PDB structure files as reference structures : 7KI4 and |
| 8 | 6c9e | - | https://www.nature.com/articles/s42003-024-07299-8 | The structural and functional analysis of mycobacteria cysteine desulfurase-loaded encapsulin | 2024 | Y Tang, Y Liu, M Zhang, W Lan, M Ma, C Chen- Communications, 2024 - nature.com | ( PDB 6C9E ) as the initial model. Model building and refinement was performed within Coot 0.8.9.2 and Phenix 1.14, respectively. The final refined models were validated by MolProbity |
| 9 | 7kds | 7kvy, 7mmz, 8sf3 | https://www.nature.com/articles/s41557-024-01646-2 | Enzymatic synthesis of azide by a promiscuous N-nitrosylase | 2024 | A Del Rio Flores, R Zhai, DW Kastner, K Seshadri- Nature Chemistry, 2024 - nature.com | To shed light on the catalytic mechanism of Tri17, we solved the X-ray crystal structure of Tri17 at a resolution of 2.4 in its apo form and generated structural models with AlphaFold2 ( |
| 10 | 4nps | 4yk1 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4109528 | Full-Length Structure of the Host Targeted Bacterial Effector Bep1 Reveals a Novel Structural Domain Conserved in FIC Effector Proteins From Bartonella | 2024 | M Huber, A Wagner, J Reiners, CEM Seyfert, T Sharpe - papers.ssrn.com | the full-length structure of Bep1 from Bartonella clarridgeiae as the first complete structure of a Bep- In addition to our full-length Bep1 structure , that shows the insertion of the structural |