We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YGK | 2025 | 0 |
| 9YH9 | 2025 | 0 |
| 9YIS | 2025 | 0 |
| 7KQZ | 2020 | 0 |
| 7KI9 | 2021 | 0 |
| 9YIT | 2025 | 0 |
| 7KI8 | 2021 | 0 |
| 7K72 | 2020 | 0 |
| 7K69 | 2021 | 0 |
| 7K68 | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7ki4 | 7ki6 | https://link.springer.com/article/10.1007/s11030-024-10932-7 | From antibiotic to antiviral: computational screening reveals a multi-targeting antibiotic from Streptomyces spp. against Nipah virus fusion proteins | 2024 | NMO Odchimar, MAB Macalalad, FL Orosco- Molecular Diversity, 2024 - Springer | , a crystal structure was used ( PDB ID: 5EVM). structure , homology modeling was performed using SWISSMODEL with the following PDB structure files as reference structures : 7KI4 and |
| 2 | 7kds | 7kvy, 7mmz, 8sf3 | https://www.nature.com/articles/s41557-024-01646-2 | Enzymatic synthesis of azide by a promiscuous N-nitrosylase | 2024 | A Del Rio Flores, R Zhai, DW Kastner, K Seshadri- Nature Chemistry, 2024 - nature.com | To shed light on the catalytic mechanism of Tri17, we solved the X-ray crystal structure of Tri17 at a resolution of 2.4 in its apo form and generated structural models with AlphaFold2 ( |
| 3 | 4o5m | 3u0i | https://zaguan.unizar.es/record/135847 | Flavoenzymes in Microbial Systems: Analysis of Structure-Function Relationships | 2024 | MI Minjarez Saenz, MM Medina Trullenque - zaguan.unizar.es | Esta Tesis Doctoral se plante con objeto de mejorar nuestra comprensin de los mecanismos de accin especficos de especie en sistemas dependientes de flavoenzimas como |
| 4 | 7jzu | - | https://www.sciencedirect.com/science/article/pii/S002197972401422X | Bioengineered self-assembled nanofibrils for high-affinity SARS-CoV-2 capture and neutralization | 2024 | M Behbahanipour, S Navarro, O Brcenas- Journal of colloid and, 2024 - Elsevier | extracted from the Cryo-EM structure of the minibinder bound to the SARS-CoV-2 Spike protein ( pdb entry 7JZU ). However, due to the relatively low resolution of the structure (3.1 ), |
| 5 | 6bfu | - | https://www.cell.com/immunity/fulltext/S1074-7613(24)00481-3?uuid=uuid%3A254e5a1... | Isolation and escape mapping of broadly neutralizing antibodies against emerging delta-coronaviruses | 2024 | M Rexhepaj, D Asarnow, L Perruzza, YJ Park- Immunity, 2024 - cell.com | (B) Sitewise escape (y axis in line plots in A) mapped on the PDCoV RBD structure 38 ( PDB : 6BFU ). The key at the right delineates the receptor-binding loops (blue) versus core RBD ( |
| 6 | 6tz8 | - | https://theses.hal.science/tel-04464042/document | Caractrisation de lectines de champignons opportunistes mergents et identification de nouvelles lectines partir d'extraits fongiques | 2024 | T CREPIN, U KRENGEL, A de Palma, GJ BOONS - theses.hal.science | Cyanovirin-N (CV-N) is a small protein from the cyanobacterium Nostoc ellipsosporum that binds mannosides and possesses strong virucidal properties against a wide range of viruses (... C. neoformans (PDB ID: 6TZ8) and Coccidioides immitis (PDB ID: 5B8I) [148]. In all the fungal complexes, the overall fold of calcineurin was very similar |
| 7 | 4q1t | - | https://www.pnas.org/doi/abs/10.1073/pnas.2413673121 | Challenging a decades-old paradigm: ProB and ProA do not channel the unstable intermediate in proline synthesis after all... | 2024 | MS Newton, AL Azadeh, AB Morgenthaler- Proceedings of the, 2024 - pnas.org | We show that changes in the structures of the kinase or jejuni ( PDB 2AKO). Conserved or conservatively substituted glutamate and sulfate in PDB 2J5V and ADP in PDB 2AKO. These ...Fig. 4. Replacement of E. coli ProB with ProBs from B. thailandensis and C. jejuni does not impair growth of E. coli on glucose. (A) Surfaces of ProB protomers from E. coli (PDB 2J5V), B. thailandensis (PDB 4Q1T), and C. jejuni (PDB 2AKO) |
| 8 | 5vxt | - | https://www.cell.com/cell-reports/fulltext/S2211-1247(24)01353-6 | Biochemical and structural characterization of enzymes in the 4-hydroxybenzoate catabolic pathway of lignin-degrading white-rot fungi | 2024 | E Kuatsjah, A Schwartz, M Zahn, K Tornesakis- Cell Reports, 2024 - cell.com | Another close structural homolog is a catechol 1,2-dioxygenase from the bacterium Burkholderia ambifaria with bound catechol ( PDB : 5VXT ) with 25% sequence identity with the fungal |
| 9 | 4kam | - | https://www.nature.com/articles/s41598-024-79886-y | Targeting Candida albicans O-acetyl-L-homoserine sulfhydrylase (Met15p) in antifungal treatment | 2024 | A Kupliska, K Rzd, J Stefaniak-Skorupa- Scientific Reports, 2024 - nature.com | Several O-acetyl-L-homoserine or L-homocysteine structural analogs were analyzed as potential inhibitors of CaMet15p. In these studies, a newly developed RP-HPLC-MS method ... The quaternary structure of CaMet15p is therefore consistent with those of its S. cerevisiae29 (PDB code: 8OVH), Wolinella succinogenes13 (PDB code: 3RI6), and Mycobacterium marinum30 (PDB code: 4KAM) counterparts. |
| 10 | 6tys | - | https://www.nature.com/articles/s41467-024-48601-w | A potent Henipavirus cross-neutralizing antibody reveals a dynamic fusion-triggering pattern of the G-tetramer | 2024 | P Fan, M Sun, X Zhang, H Zhang, Y Liu, Y Yao- Nature, 2024 - nature.com | Top (a) and side (b) views of the crystal structure of the NiV BD G HD /1E5 Fab complex. G HD /EB2 ( PDB ID: 2VSM) and G HD /m102.3 ( PDB ID: 6CMI) structures ... Prediction of G-F interactions based on Discovery Studio The GHD (PDB ID: 2VSM) and sF (PDB ID: 6TYS) proteins were docked using the Dock Proteins protocol (ZDOCK) in Discovery Studio 4.5. |