We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YL5 | 2025 | 0 |
| 7K5Z | 2020 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 8dya | - | https://www.nature.com/articles/s41467-024-49656-5 | A broadly generalizable stabilization strategy for sarbecovirus fusion machinery vaccines | 2024 | J Lee, C Stewart, A Schfer, EM Leaf, YJ Park- Nature, 2024 - nature.com | (Right) SARS-CoV-2 S ( PDB 6VXX) colored by sequence conservation across multiple the C-44 cryoEM structure previously determined with splayed open apex 17 ( PDB 8DYA ). c Size- |
| 2 | 6bfu | - | https://www.nature.com/articles/s41467-024-49693-0 | Neutralizing antibodies reveal cryptic vulnerabilities and interdomain crosstalk in the porcine deltacoronavirus spike protein | 2024 | W Du, O Debski-Antoniak, D Drabek- Nature, 2024 - nature.com | the antigenic structure of the PDCoV S protein. Through functional and structural characterization The PDB file of PDCoV spike protein ( PDB ID: 6BFU ) and SARS-CoV-2 spike protein ( |
| 3 | 6vxx | 6vyb | https://periodicals.karazin.ua/biophysvisnyk/article/view/26227 | In silico analysis of binding sites for potential inhibitors targeting the complex of furin protease | 2025 | NV Khmil, AV Shestopalova- Biophysical, 2025 - periodicals.karazin.ua | structures of the S protein ( PDB IDs: 6VYB, 6VXX , 7VHJ) from the Protein Data Bank (www.rcsb.org ) were docked with furin protease ( PDB ID: onto 6VYB-5JXG, 6VXX -5JXG, and 7VHJ- |
| 4 | 6uww | - | https://onlinelibrary.wiley.com/doi/abs/10.1155/bmri/4196295 | In Silico Investigation of Phytochemicals From Clinically Tested Herbal Extracts as Potential Dihydrofolate Reductase Inhibitors for Buruli Ulcer | 2025 | AAK Mohamed, T Woasiedem- BioMed Research, 2025 - Wiley Online Library | original Schrdinger-prepared structure . This PDB structure , while Schrdinger retains the original biological residue numbering from the full-length protein sequence ( PDB ID: 6UWW ). |
| 5 | 7kna | - | https://www.nature.com/articles/s41551-025-01411-x | Microfluidics combined with electron microscopy for rapid and high-throughput mapping of antibodyviral glycoprotein complexes | 2025 | LM Sewall, R de Paiva Froes Rocha- Nature Biomedical, 2025 - nature.com | well as structural insight into sites of vulnerability 4 ; however, solving structures of individual Models of HA H1 ( PDB 7KNA ) and a human polyclonal Fab with a polyalanine backbone |
| 6 | 7jv4 | 7so9, 7soe, 7ra8, 7sob | https://search.proquest.com/openview/5483cc549d493a55c598e1f12feeae1b/1?pq-origs... | Bridging Experimental and Computational Approaches for Protein Structure Analysis and Dynamic Modeling | 2025 | D Stepanenko - 2025 - search.proquest.com | FPPR cluster analysis applied to spike PDB structures . The 1 value for the corresponding PDB structure . . . . . . 88 5.8 1 value for the corresponding PDB structure . 92 xv 5.10 Scatter |
| 7 | 7jzn | - | https://www.cell.com/heliyon/fulltext/S2405-8440(25)01465-3?uuid=uuid%3Acd981904... | Novel method for prioritizing protein binding sites using pocket analysis and MD simulations | 2025 | AD Biswas, E Sabato, S Vittorio, P Aletayeb, A Pedretti- Heliyon, 2025 - cell.com | We picked a list of 8 resolved SARS-CoV-2 spike structures from the PDB by & 3 of 7JZN . (B) The spike protein conformational states are superimposed for each pair, with one structure |
| 8 | 7jvc | - | https://link.springer.com/article/10.1186/s12951-025-03243-y | A bivalent spike-targeting nanobody with anti-sarbecovirus activity | 2025 | IC Swart, OJ Debski-Antoniak, A Zegar- Journal of, 2025 - Springer | Structural alignment of an ACE2 RBD structure ( PDB : 6VW1) [37] with a single molecule of 7F and single RBD showed that the interaction major-interface would not hinder ACE2 |
| 9 | 4g5d | 4h7p, 4h51 | https://www.benthamdirect.com/content/journals/cmc/10.2174/010929867332327124100... | Targeting Leishmaniasis with Nitrovinyl Derivatives: Synthesis, In Vitro Assessment, and Computational Exploration | 2025 | A Asadipour, FG Khani- Current Medicinal, 2025 - benthamdirect.com | was incorporated into the structures of -nitrostyrenes to conduct PDB files were employed throughout all procedures, each In the main pockets of both 1XTP and 4G5D , a - stacking |
| 10 | 4h3e | 4lsm | https://chemistry-europe.onlinelibrary.wiley.com/doi/abs/10.1002/cmdc.202500408 | Sertraline as a Scaffold for Antitrypanosoma Cruzi Drug Development: Design of Novel Derivatives and Computational Target Screening | 2025 | AS Mijoba, Z Blanco, NJ ParraGimnez- , 2025 - Wiley Online Library | For this analysis, we selected a panel of 14 key therapeutic targets involved in T. cruzi's physiological functions. The studied target proteins included: ...glyceraldehyde-3-phosphate dehydrogenase (4LSM)... superoxide dismutase (4H3E), trypanothione reductase (1AOG), and phosphodiesterase C (3V94). |