We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YL5 | 2025 | 0 |
| 7K5Z | 2020 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7jzl | 7jzm, 7jzn, 7jzu | https://advanced.onlinelibrary.wiley.com/doi/abs/10.1002/adhm.202503487 | Multivalent Protein Nanorings for Broad and Potent SARSCoV2 Neutralization | 2025 | M Behbahanipour, C Goldin, CA Prato- Advanced, 2025 - Wiley Online Library | ), their structural orientation within each differs. Both LCB1 and LCB3 are small 3-helix bundles, but whereas LCB1 ( PDB ID 7JZL ) binds in an up-down-up orientation, LCB3 ( PDB ID |
| 2 | 7jw0 | 7k45, 7lxy, 7so9, 7sob | https://academic.oup.com/ve/article-abstract/11/1/veaf027/8159764 | Comprehensive analysis of SARS-CoV-2 Spike evolution: epitope classification and immune escape prediction | 2025 | NFB Teruel, M Crown, R Rajsbaum, M Bashton- Virus, 2025 - academic.oup.com | to epitope 3 from structures 7A5R, 6W41, 7LM8, 7S5Q, 7JW0 , 7X1M, and 7R6X. Comparing all the vectors of interaction for S309, we see that one Kappa structure ( PDB 7SOB), from |
| 3 | 4f40 | 4gie | https://www.mdpi.com/1424-8247/18/10/1489 | Computational Investigation of the Potential Antileishmanial Mechanism of the Nitroindazole Derivative VATR131 | 2025 | O Casanova-Alvarez, N Mollineda-Diogo- Pharmaceuticals, 2025 - mdpi.com | structural damage to the parasite, further supporting their therapeutic potential [17]. VATR131s leishmanicidal activity, causing both structural and ultrastructural damage to the parasite [ |
| 4 | 6tz8 | - | https://www.pnas.org/doi/abs/10.1073/pnas.2419883121 | Structure-guided design and synthesis of C22-and C32-modified FK520 analogs with enhanced activity against human pathogenic fungi | 2025 | PA Dome, P Jeong, G Nam, H Jang, A Rivera- Proceedings of the, 2025 - pnas.org | neoformans complexes based on available crystal structures ( PDB ID: 7U0T and 6TZ8 , respectively). Analysis of docking models for C22 derivatives in the human and fungal binding |
| 5 | 3i3r | 3nrr | https://www.cell.com/molecular-plant/abstract/S1674-2052(25)00209-6 | Structural insights into a plant-conserved DHFR-TS reveal a selective herbicide target | 2025 | J Haywood, KJ Breese, DP McDougal, C Verdonk- Molecular Plant, 2025 - cell.com | A molecular replacement model was generated based on the last common atom of PDB 3I3R and the structure solved with PHASER from CCP4100. Manual building and refinement |
| 6 | 7luy | 6wct | https://www.nature.com/articles/s41467-025-61732-y | Comprehensive profiling of the catalytic conformations of human Guanylate kinase | 2025 | L Wang, Z Li, Y Xuan, J Qin, S Li, F Zhong- Nature, 2025 - nature.com | The atomic coordinates and structure factors for GMPK in its free form and substrate-bound forms generated in this study were deposited to the Protein Data Bank ( PDB ) ... The source data underlying Figs. 1i, 2c, 3i and Supplementary Fig. 6c–i, 9a–d, 11e are provided as a Source Data file. Previously published data for crystal structures of GMPK are available with PDB accession codes: 1EX6, 1EX7, 1LVG, 1S4Q, 1S96, 1ZNX, 1ZNW, 1GKY, 2ANB, 2ANC, 2QOR, 3TR0, 6WCT, 7LUY, 8PTS. |
| 7 | 7jzl | 7jzn | https://pmc.ncbi.nlm.nih.gov/articles/PMC12308813/ | Exploring the Intrinsic Structural Plasticity and Conformational Dynamics of Human Beta Coronavirus Spike Glycoproteins | 2025 | YF e Silva, HH Fokoue- Journal of Chemical, 2025 - pmc.ncbi.nlm.nih.gov | Such information was related to each PDB -ID, but within the trimeric bound structures , we evaluate whether each protomer has interactions with the ligands by calculating the number of |
| 8 | 6uj5 | - | https://www.cell.com/cell-chemical-biology/abstract/S2451-9456(25)00130-8 | Pantothenate kinase is an effective target for antifungal therapy | 2025 | J Regan, C DeJarnette, P Reitler, S Gihaz- Cell Chemical, 2025 - cell.com | cerevisiae experimental structure ( PDB : 6UJ5 ), we performed molecular docking analysis with MNS. These studies suggest that the MNS binding site overlaps with that of pantothenate |
| 9 | 6uhw | - | https://arxiv.org/abs/2507.14156 | All-atom inverse protein folding through discrete flow matching | 2025 | K Yi, K Jamali, SHW Scheres- arXiv preprint arXiv:2507.14156, 2025 - arxiv.org | structures for the sequences generated by both ADFLIP and LigandMPNN. We assessed structural similarity to the reference structure from the PDB scores from the structure prediction ( |
| 10 | 6tys | - | https://www.nature.com/articles/s41594-025-01598-2 | A nanobody-based therapeutic targeting Nipah virus limits viral escape | 2025 | A Isaacs, GV Nieto, X Zhang, N Modhiran- Nature Structural &, 2025 - nature.com | Data Bank ( PDB ) 5EVM) and other antibody-bound NiV F structures ( PDB 6TYS and 7UPD) to a previously determined cryo-EM structure of apo F ( PDB 8DNG), which faces inward |